Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACL0K2_RS20105 Genome accession   NZ_CP178378
Coordinates   4354969..4355601 (+) Length   210 a.a.
NCBI ID   WP_045162887.1    Uniprot ID   A0A0D9AN99
Organism   Pseudomonas sp. YJ42     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4349969..4360601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL0K2_RS20085 (ACL0K2_20085) lolD 4350018..4350716 (+) 699 WP_413044497.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ACL0K2_RS20090 (ACL0K2_20090) - 4350716..4351963 (+) 1248 WP_413043290.1 lipoprotein-releasing ABC transporter permease subunit -
  ACL0K2_RS20095 (ACL0K2_20095) - 4351973..4352488 (-) 516 WP_045162888.1 DUF2062 domain-containing protein -
  ACL0K2_RS20100 (ACL0K2_20100) comA 4352672..4354897 (+) 2226 WP_413043291.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACL0K2_RS20105 (ACL0K2_20105) exbB 4354969..4355601 (+) 633 WP_045162887.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACL0K2_RS20110 (ACL0K2_20110) - 4355598..4356026 (+) 429 WP_045162886.1 ExbD/TolR family protein -
  ACL0K2_RS20115 (ACL0K2_20115) lpxK 4356026..4357030 (+) 1005 WP_045162885.1 tetraacyldisaccharide 4'-kinase -
  ACL0K2_RS20120 (ACL0K2_20120) - 4357077..4357262 (+) 186 WP_025241005.1 Trm112 family protein -
  ACL0K2_RS20125 (ACL0K2_20125) kdsB 4357259..4358023 (+) 765 WP_045162884.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACL0K2_RS20130 (ACL0K2_20130) - 4358026..4358490 (+) 465 WP_239609077.1 low molecular weight protein-tyrosine-phosphatase -
  ACL0K2_RS20135 (ACL0K2_20135) murB 4358487..4359506 (+) 1020 WP_413043292.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22711.00 Da        Isoelectric Point: 7.9111

>NTDB_id=1089253 ACL0K2_RS20105 WP_045162887.1 4354969..4355601(+) (exbB) [Pseudomonas sp. YJ42]
MWELVKAGGWIMLPIILCSVAAAGIIIERLWTLRPSRVTPSHLLGQVWKWIKDKKLSNQKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVVHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSAFMGSGMANAPLLAAGISKALITTAA
GLMVGIPALFFHRFLLRRVEELVVGMEQEAIKLVEVVQGDRDVDLGEGKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1089253 ACL0K2_RS20105 WP_045162887.1 4354969..4355601(+) (exbB) [Pseudomonas sp. YJ42]
GTGTGGGAGCTGGTTAAAGCGGGCGGCTGGATAATGCTGCCAATCATTCTATGTTCCGTCGCCGCGGCTGGCATCATCAT
CGAAAGACTATGGACGCTACGACCCAGTCGCGTGACTCCGTCGCACCTCCTCGGTCAGGTGTGGAAGTGGATCAAGGACA
AGAAGCTCAGCAACCAGAAACTTAAAGAGCTGCGCGCGGATTCGCCACTCGGCGAGATCCTAGCTGCGGGCCTGGCCAAT
TCCAAACATGGCCGGGAGATCATGAAGGAGTGTATCGAGGAGGCTGCGGCGCGTGTCGTCCATGACCTCGAGCGCTACCT
CAATGCGTTGGGTACCATTGCCGGCATCGCGCCATTGCTCGGCCTGCTAGGCACCGTGCTCGGAATGATCGAGATCTTCA
GTGCCTTCATGGGATCAGGCATGGCCAATGCACCCTTGCTCGCTGCGGGTATCTCCAAGGCATTGATCACCACGGCGGCT
GGCCTGATGGTCGGTATCCCGGCCTTGTTTTTTCACCGTTTCCTGCTGCGCCGCGTCGAAGAACTGGTGGTTGGAATGGA
GCAGGAGGCGATCAAGCTGGTCGAGGTCGTACAGGGCGACCGCGACGTCGATCTGGGTGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D9AN99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

96.19

100

0.962

Multiple sequence alignment