Detailed information NTG1089247

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACL0K2_RS17320
• Genome accession: NZ_CP178378
• Coordinates: 3773194..3774534 (-)
• Length: 446 a.a.
• NCBI ID: WP_045160764.1
• Uniprot ID: A0A0D9AV77
• Organism: Pseudomonas sp. YJ42
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3768194..3779534

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACL0K2_RS17305 (ACL0K2_17305)	-	3768259..3770223 (-)	1965	WP_413043126.1	methyl-accepting chemotaxis protein	-
ACL0K2_RS17310 (ACL0K2_17310)	-	3770272..3771885 (-)	1614	WP_045160762.1	response regulator	-
ACL0K2_RS17315 (ACL0K2_17315)	-	3772100..3773155 (+)	1056	WP_045160763.1	DUF2333 family protein	-
ACL0K2_RS17320 (ACL0K2_17320)	pilR	3773194..3774534 (-)	1341	WP_045160764.1	sigma-54-dependent transcriptional regulator	Regulator
ACL0K2_RS17325 (ACL0K2_17325)	pilS	3774645..3776237 (-)	1593	WP_045160765.1	sensor histidine kinase	Regulator
ACL0K2_RS17330 (ACL0K2_17330)	-	3776227..3776463 (-)	237	WP_045160766.1	PP0621 family protein	-
ACL0K2_RS17335 (ACL0K2_17335)	-	3776561..3777562 (-)	1002	WP_045160767.1	outer membrane protein assembly factor BamD	-
ACL0K2_RS17340 (ACL0K2_17340)	rluD	3777846..3778820 (+)	975	WP_045160768.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49991.55 Da
• Isoelectric Point: 6.6969

>NTDB_id=1089247 ACL0K2_RS17320 WP_045160764.1 3773194..3774534(-) (pilR) [Pseudomonas sp. YJ42]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARECLAREHYDLCLTDMRLPDGCGLELVQFIQQQYPHLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLGRLRELVNTALRLRNPNPNELTVDSRLLGASPPMNVLRKQIGKLARSQAPV
YISGESGSGKELVARLIHEQGPRHERPFVPVNCGAIPSELMESEFFGHKKGSFTGAMEDKPGLFQAANGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRSVGGSKEVVVDVRILCATHKDLANEVTAGRFRQDLYYRLNVIELRVPPLRERREDIAQLAEV
MLRRLAQECGDTAARLHPDALAKLQSYRFPGNVRELENMLERAYTLCEGEEIKPSDLRLSDAPGIAENGEASLAQIDNLE
DHLEEIERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=1089247 ACL0K2_RS17320 WP_045160764.1 3773194..3774534(-) (pilR) [Pseudomonas sp. YJ42]
ATGACCGCCCGCCAGAAAGCGCTGATCATCGATGACGAACCCGATATCCGGGAACTCCTGGAGATCACCCTTGGACGCAT
GAAGCTGGACACCCGCAGCGCCCGCAATCTCAAGGAAGCTCGCGAGTGCCTGGCGCGCGAGCACTATGATTTATGCCTGA
CTGACATGCGTCTGCCGGACGGCTGCGGACTGGAGTTGGTGCAGTTCATTCAGCAGCAGTATCCGCACCTGCCCGTGGCA
ATGATCACTGCCTATGGCAGCCTCGACACCGCCATCGGCGCGCTCAAGGCCGGAGCTTTCGATTTTCTGACCAAGCCGGT
GGATCTCGGGCGGCTACGCGAACTGGTCAACACCGCGCTGCGGCTGCGTAATCCGAACCCCAACGAGCTGACGGTCGATA
GTCGCTTGCTCGGCGCCTCGCCCCCTATGAACGTGCTGCGCAAGCAGATCGGCAAACTGGCGCGCAGCCAGGCGCCGGTC
TATATCAGCGGTGAGTCGGGCAGCGGCAAGGAACTGGTGGCACGGCTGATCCATGAGCAGGGCCCACGTCATGAACGTCC
ATTCGTTCCGGTCAACTGTGGTGCGATCCCGTCGGAATTGATGGAAAGCGAGTTCTTCGGGCATAAGAAAGGCAGTTTCA
CCGGTGCCATGGAAGACAAACCGGGTCTGTTCCAGGCAGCCAATGGTGGCACGCTGTTTCTCGATGAGGTGGCCGACCTT
CCCTTGCCAATGCAAGTGAAGCTGCTGCGCGCCATTCAGGAAAAAGCCGTGCGTTCGGTTGGCGGGTCCAAGGAAGTCGT
GGTCGATGTACGGATTCTCTGCGCTACGCATAAGGATCTGGCCAACGAAGTCACCGCTGGGCGTTTTCGCCAGGATTTGT
ACTATCGCCTGAATGTCATCGAGCTACGTGTGCCGCCGCTGCGCGAGCGCCGCGAAGACATTGCCCAGTTGGCCGAGGTC
ATGCTCCGTCGCCTCGCCCAGGAATGTGGCGATACGGCCGCCCGCCTGCATCCCGATGCGCTGGCGAAACTGCAGAGCTA
TCGATTCCCGGGCAACGTACGCGAGCTGGAAAACATGCTGGAGCGCGCCTACACACTCTGTGAAGGTGAGGAAATCAAAC
CCAGCGATCTGCGCCTGTCCGACGCGCCGGGCATAGCCGAAAACGGCGAGGCAAGCCTTGCGCAGATCGACAATCTCGAA
GACCACCTCGAGGAAATCGAGCGCAAGCTGATCATGCAGGCACTGGAGGAAACCCGCTGGAATCGCACCGCGGCGGCCCA
GCGTCTGGGCCTGTCGTTCCGCTCCATGCGCTACCGTTTGAAGAAGCTCGGACTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Response regulator receiver domain (Response_reg) (8-116)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

3D structure

• AlphaFold DB: A0A0D9AV77

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	84.234	99.552	0.839
pilR	Acinetobacter baumannii strain A118	49.237	100	0.507
luxO	Vibrio cholerae strain A1552	39.101	99.776	0.39