Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ACKWDP_RS17735 Genome accession   NZ_CP178354
Coordinates   3643749..3644567 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain A297     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3638749..3649567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWDP_RS17720 (ACKWDP_17720) pilE 3638968..3639393 (-) 426 WP_000788336.1 type IV pilin protein Machinery gene
  ACKWDP_RS17725 (ACKWDP_17725) pilY2 3639390..3639872 (-) 483 WP_001046489.1 type IV pilin protein Machinery gene
  ACKWDP_RS17730 (ACKWDP_17730) pilY1 3639883..3643737 (-) 3855 WP_000768943.1 vWA domain-containing protein Machinery gene
  ACKWDP_RS17735 (ACKWDP_17735) pilX 3643749..3644567 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACKWDP_RS17740 (ACKWDP_17740) pilW 3644564..3645565 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  ACKWDP_RS17745 (ACKWDP_17745) pilV 3645566..3646126 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ACKWDP_RS17750 (ACKWDP_17750) fimU 3646120..3646593 (-) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACKWDP_RS17755 (ACKWDP_17755) ispH 3646763..3647713 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACKWDP_RS17760 (ACKWDP_17760) gmk 3647836..3648465 (+) 630 WP_000015937.1 guanylate kinase -
  ACKWDP_RS17765 (ACKWDP_17765) rpoZ 3648538..3648816 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACKWDP_RS17770 (ACKWDP_17770) - 3648855..3648985 (+) 131 Protein_3471 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=1089060 ACKWDP_RS17735 WP_000149374.1 3643749..3644567(-) (pilX) [Acinetobacter baumannii strain A297]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1089060 ACKWDP_RS17735 WP_000149374.1 3643749..3644567(-) (pilX) [Acinetobacter baumannii strain A297]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment