Detailed information NTG1088880

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: ACLF6L_RS02400
• Genome accession: NZ_CP178333
• Coordinates: 548002..549063 (-)
• Length: 353 a.a.
• NCBI ID: WP_238617275.1
• Uniprot ID: -
• Organism: Ectothiorhodospira shaposhnikovii strain PHS-Q
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 543002..554063

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLF6L_RS02380 (ACLF6L_02380)	pilQ	544106..546271 (-)	2166	WP_412852286.1	type IV pilus secretin PilQ	-
ACLF6L_RS02385 (ACLF6L_02385)	-	546290..546841 (-)	552	WP_238617272.1	pilus assembly protein PilP	-
ACLF6L_RS02390 (ACLF6L_02390)	-	546834..547436 (-)	603	WP_238617273.1	type 4a pilus biogenesis protein PilO	-
ACLF6L_RS02395 (ACLF6L_02395)	-	547433..548002 (-)	570	WP_412852287.1	PilN domain-containing protein	-
ACLF6L_RS02400 (ACLF6L_02400)	pilM	548002..549063 (-)	1062	WP_238617275.1	type IV pilus assembly protein PilM	Machinery gene
ACLF6L_RS02405 (ACLF6L_02405)	-	549250..551607 (+)	2358	WP_412852288.1	penicillin-binding protein 1A	-
ACLF6L_RS02410 (ACLF6L_02410)	-	551627..552220 (+)	594	WP_238617277.1	hypothetical protein	-
ACLF6L_RS02415 (ACLF6L_02415)	hemE	552245..553312 (-)	1068	WP_238617278.1	uroporphyrinogen decarboxylase	-
ACLF6L_RS02420 (ACLF6L_02420)	-	553440..553892 (-)	453	WP_238617279.1	GatB/YqeY domain-containing protein	-

Sequence

Protein

• Length: 353 a.a.
• Molecular weight: 38142.77 Da
• Isoelectric Point: 4.8346

>NTDB_id=1088880 ACLF6L_RS02400 WP_238617275.1 548002..549063(-) (pilM) [Ectothiorhodospira shaposhnikovii strain PHS-Q]
MIGFARKRPTLIGIDISSTSVKMVELSRSGASYRVEGYSVEPLPGSAVMEKVIQDVDAVGQAIKTAYRRLGSANKHCALA
VPSSAVITKVITMPANLKEDELEGQIQVEADQYIPFALEEVNLDFEIIGPAPKNPDLVEVLLSASRSENVEMRVAAAELA
GLTPKVVDVEAYAIEHAYPLLAAQAPELDPDGLAAVIDVGATMTAITILHKQKIIYTREQSFGGKQLTEEIMRRFGMSYE
EAGRSKKDGGLPDSYVPEVLEPFKDTMAQQVARFLQFFYAASSHAHVDQIILAGGCAVIPGVDEQIESRLATLARVGNPF
SQMSLHPRVNPQRLGGDAPSLMIACGLAMRSFD

Nucleotide

• Length: 1062 bp

>NTDB_id=1088880 ACLF6L_RS02400 WP_238617275.1 548002..549063(-) (pilM) [Ectothiorhodospira shaposhnikovii strain PHS-Q]
GTGATAGGATTCGCCCGCAAACGCCCCACGCTGATCGGAATCGACATCAGCTCCACCTCCGTGAAGATGGTGGAACTCTC
CCGTTCAGGCGCCAGTTACCGGGTGGAAGGCTACAGCGTGGAGCCCTTGCCCGGCAGCGCGGTCATGGAAAAGGTCATCC
AGGACGTGGACGCCGTCGGCCAGGCGATCAAGACCGCCTACCGGCGCCTGGGCAGCGCCAACAAGCACTGCGCCCTGGCC
GTCCCCTCCTCGGCGGTGATCACCAAGGTCATCACCATGCCCGCCAACCTCAAGGAAGACGAGCTGGAAGGACAGATCCA
GGTCGAGGCCGACCAGTACATCCCCTTCGCCCTGGAAGAAGTCAACCTGGACTTCGAGATCATCGGCCCCGCGCCCAAGA
ATCCCGATCTGGTGGAGGTGCTGCTCTCCGCCTCCCGCAGCGAAAACGTGGAGATGCGGGTGGCCGCCGCCGAACTGGCG
GGCCTGACCCCCAAGGTGGTGGACGTGGAGGCCTACGCCATCGAGCACGCCTACCCCCTGCTGGCCGCCCAGGCCCCGGA
ACTGGACCCGGACGGCCTGGCCGCCGTGATCGACGTGGGCGCCACCATGACGGCCATCACCATCCTGCACAAGCAAAAGA
TCATCTACACCCGGGAACAGAGTTTCGGCGGCAAGCAACTCACCGAGGAAATCATGCGCCGTTTCGGCATGTCCTACGAA
GAAGCCGGCCGCAGCAAGAAGGACGGCGGCCTGCCCGACAGCTATGTCCCCGAGGTACTGGAACCCTTCAAGGACACCAT
GGCCCAGCAGGTTGCCCGGTTCCTGCAGTTCTTCTACGCCGCCAGCAGCCATGCCCACGTGGACCAGATCATCCTGGCCG
GCGGCTGCGCCGTCATCCCCGGCGTGGACGAACAGATCGAATCCCGGCTAGCCACCCTCGCCCGGGTGGGCAACCCCTTC
AGCCAGATGAGCCTTCACCCCCGCGTCAACCCGCAGCGCCTGGGCGGTGACGCCCCGTCACTGATGATCGCCTGCGGCCT
TGCGATGAGGAGTTTCGACTGA

Domains

Predicted by InterProScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-352)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Acinetobacter baumannii D1279779	49.435	100	0.496
comM	Acinetobacter nosocomialis M2	49.153	100	0.493
comM	Acinetobacter baylyi ADP1	47.429	99.15	0.47
pilM	Legionella pneumophila strain ERS1305867	46.11	98.3	0.453