Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACI766_RS03570 Genome accession   NZ_CP178323
Coordinates   745126..745623 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas sp. DL     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 740126..750623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI766_RS03555 bfr 740134..740598 (+) 465 WP_003093668.1 bacterioferritin -
  ACI766_RS03560 uvrA 740670..743507 (-) 2838 WP_034002818.1 excinuclease ABC subunit UvrA -
  ACI766_RS03565 - 743721..745109 (+) 1389 WP_003103910.1 MFS transporter -
  ACI766_RS03570 ssb 745126..745623 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  ACI766_RS03575 pchA 745712..747142 (-) 1431 WP_003114686.1 isochorismate synthase PchA -
  ACI766_RS03580 pchB 747139..747444 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  ACI766_RS03585 pchC 747444..748199 (-) 756 WP_003114687.1 pyochelin biosynthesis editing thioesterase PchC -
  ACI766_RS03590 pchD 748196..749839 (-) 1644 WP_016852424.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=1088805 ACI766_RS03570 WP_003114685.1 745126..745623(+) (ssb) [Pseudomonas sp. DL]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1088805 ACI766_RS03570 WP_003114685.1 745126..745623(+) (ssb) [Pseudomonas sp. DL]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515

Multiple sequence alignment