Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACFCT9_RS01885 Genome accession   NZ_CP178241
Coordinates   396482..397372 (+) Length   296 a.a.
NCBI ID   WP_412520368.1    Uniprot ID   -
Organism   Staphylococcus simulans strain PFJB-50N     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 391482..402372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFCT9_RS01860 - 391663..392151 (+) 489 WP_412520361.1 GyrI-like domain-containing protein -
  ACFCT9_RS01865 ylqF 392289..393158 (+) 870 WP_412520363.1 ribosome biogenesis GTPase YlqF -
  ACFCT9_RS01870 - 393158..393928 (+) 771 WP_412520364.1 ribonuclease HII -
  ACFCT9_RS01875 sucC 394156..395322 (+) 1167 WP_412520365.1 ADP-forming succinate--CoA ligase subunit beta -
  ACFCT9_RS01880 sucD 395343..396257 (+) 915 WP_412520367.1 succinate--CoA ligase subunit alpha -
  ACFCT9_RS01885 dprA 396482..397372 (+) 891 WP_412520368.1 DNA-processing protein DprA Machinery gene
  ACFCT9_RS01890 topA 397515..399581 (+) 2067 WP_412520370.1 type I DNA topoisomerase -
  ACFCT9_RS01895 trmFO 399665..400972 (+) 1308 WP_412520371.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACFCT9_RS01900 xerC 401094..401984 (+) 891 WP_412520372.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 296 a.a.        Molecular weight: 33769.67 Da        Isoelectric Point: 9.1717

>NTDB_id=1088604 ACFCT9_RS01885 WP_412520368.1 396482..397372(+) (dprA) [Staphylococcus simulans strain PFJB-50N]
MNLKDLDLELLRLRYAGYSTKKIYALLIRYPDYFEGKPHEKMTKLRQFSQNTTSKPMHRHYQTYCATDSLTIYQSLDDQN
IHLLSIFHPDYPHLLKHIYAPPLLLFYKGNLSCLKAQHYLSIVGSREATRYTQNALELLLKDEVTHDLVIVSGVAKGGDA
FAHEAALHYNMATIGVLAFGHHHHYPKETRALRTRIEQTGLTISEYIPTERPARYKFPERNRIISGLSQGVLITESRERS
GAQITIDSALEQGRNVYVLPGSLFQTLTIGNLKRAQEGAKIVLNAQDILEDYGTLK

Nucleotide


Download         Length: 891 bp        

>NTDB_id=1088604 ACFCT9_RS01885 WP_412520368.1 396482..397372(+) (dprA) [Staphylococcus simulans strain PFJB-50N]
TTGAACCTCAAAGATTTAGATTTAGAACTCCTCAGACTACGCTACGCAGGTTATTCCACAAAGAAAATTTATGCGCTTTT
AATCAGGTATCCGGATTATTTTGAAGGTAAACCACATGAAAAAATGACAAAACTTCGACAATTTTCACAAAATACCACCT
CTAAACCGATGCATCGACATTATCAAACCTATTGTGCAACAGATTCTCTCACTATTTATCAATCTTTGGATGACCAGAAT
ATTCACTTACTCTCTATTTTTCATCCTGATTATCCCCATTTACTCAAACATATTTATGCCCCTCCATTATTACTCTTCTA
TAAAGGCAATTTATCTTGTTTAAAAGCACAGCACTATTTAAGTATTGTCGGTTCTAGAGAAGCGACACGTTATACCCAAA
ATGCTTTAGAACTGCTGCTTAAAGATGAAGTTACACATGACTTAGTGATCGTTTCAGGTGTCGCAAAAGGCGGAGATGCA
TTTGCACATGAAGCCGCTTTACACTATAATATGGCGACGATTGGTGTTTTAGCATTTGGTCATCACCATCACTACCCGAA
AGAGACACGTGCATTAAGAACACGCATTGAACAAACAGGTTTAACCATCTCAGAATATATTCCGACAGAGAGACCTGCCA
GATATAAATTCCCAGAACGTAATCGTATTATCAGCGGTCTATCCCAAGGTGTACTGATTACCGAATCTAGGGAAAGAAGC
GGCGCACAAATTACAATAGATTCAGCTTTAGAACAAGGAAGAAATGTATATGTGCTGCCTGGCAGTTTATTTCAAACGTT
GACGATAGGCAATTTAAAGCGTGCGCAAGAAGGTGCGAAAATTGTCTTAAACGCACAAGATATACTAGAAGATTACGGGA
CATTAAAATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

51.568

96.959

0.5
  dprA Staphylococcus aureus MW2

51.568

96.959

0.5
  dprA Streptococcus mutans UA159

38.112

96.622

0.368

Multiple sequence alignment