Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACLII2_RS00095 Genome accession   NZ_CP178213
Coordinates   17994..18512 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. subtilis strain BM107     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 12994..23512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLII2_RS00075 yyzM 14068..14274 (+) 207 WP_003226838.1 DUF951 domain-containing protein -
  ACLII2_RS00080 yyaE 14325..16328 (+) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  ACLII2_RS00085 ychF 16455..17555 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  ACLII2_RS00090 rpsF 17666..17953 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  ACLII2_RS00095 ssbA 17994..18512 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  ACLII2_RS00100 rpsR 18556..18795 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  ACLII2_RS00105 xth 18860..19618 (+) 759 WP_003243194.1 exodeoxyribonuclease III -
  ACLII2_RS00110 ccpB 19677..20612 (+) 936 WP_003243573.1 transcriptional regulator CcpB -
  ACLII2_RS00115 yyaH 20668..21048 (+) 381 WP_003244460.1 VOC family protein -
  ACLII2_RS00120 maa 21066..21620 (+) 555 WP_003242928.1 sugar O-acetyltransferase -
  ACLII2_RS00125 yyaJ 21654..23009 (-) 1356 WP_003243011.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1088264 ACLII2_RS00095 WP_003219228.1 17994..18512(+) (ssbA) [Bacillus subtilis subsp. subtilis strain BM107]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1088264 ACLII2_RS00095 WP_003219228.1 17994..18512(+) (ssbA) [Bacillus subtilis subsp. subtilis strain BM107]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment