Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACK2SD_RS02920 Genome accession   NZ_CP178183
Coordinates   635044..635592 (+) Length   182 a.a.
NCBI ID   WP_029614564.1    Uniprot ID   A0AAI8KEP6
Organism   Pseudomonas sp. SC11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 630044..640592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2SD_RS02905 (ACK2SD_02905) bfr 630108..630572 (+) 465 WP_039580802.1 bacterioferritin -
  ACK2SD_RS02910 (ACK2SD_02910) uvrA 630676..633510 (-) 2835 WP_412461302.1 excinuclease ABC subunit UvrA -
  ACK2SD_RS02915 (ACK2SD_02915) - 633640..635034 (+) 1395 WP_039580798.1 MFS transporter -
  ACK2SD_RS02920 (ACK2SD_02920) ssb 635044..635592 (+) 549 WP_029614564.1 single-stranded DNA-binding protein Machinery gene
  ACK2SD_RS02925 (ACK2SD_02925) - 635895..637028 (+) 1134 WP_193756127.1 site-specific integrase -
  ACK2SD_RS02930 (ACK2SD_02930) - 637021..638661 (+) 1641 WP_081323639.1 site-specific integrase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20310.38 Da        Isoelectric Point: 5.9286

>NTDB_id=1088121 ACK2SD_RS02920 WP_029614564.1 635044..635592(+) (ssb) [Pseudomonas sp. SC11]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQNQQGGDQYNQGGGNNYNQGGGQQQYNQAPPRQQAPRPQQAQQRP
APQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=1088121 ACK2SD_RS02920 WP_029614564.1 635044..635592(+) (ssb) [Pseudomonas sp. SC11]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGCGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAACAGTGGACCGACAAGCAGTCGGGACAGAAGGTCGAGCGCACCGAGT
GGCACCGCGTCTCGCTGTTCGGCAAAGTGGCCGAGATCGCTGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGTGAGTGGGAAAAGGACGGCATCAAGCGTTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTCGGCGGCCGTCCGCAGAACCAGCAAGGCGGCGATCAGTACAACCAGGGTGGTGGCAACAACTACAACC
AGGGCGGTGGTCAGCAGCAATACAACCAAGCCCCACCACGTCAGCAGGCGCCGCGTCCGCAGCAGGCACAGCAGCGTCCC
GCGCCACAGCAGCAGGCACCCCAGCCCGCCGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.191

100

0.555
  ssb Glaesserella parasuis strain SC1401

50.526

100

0.527
  ssb Neisseria gonorrhoeae MS11

47.568

100

0.484
  ssb Neisseria meningitidis MC58

46.486

100

0.473

Multiple sequence alignment