Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACLF73_RS06300 Genome accession   NZ_CP177315
Coordinates   1311746..1312282 (-) Length   178 a.a.
NCBI ID   WP_412073722.1    Uniprot ID   -
Organism   Tritonibacter mobilis strain Ad19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1306746..1317282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLF73_RS06290 (ACLF73_06290) - 1307654..1308967 (+) 1314 WP_005638837.1 HlyC/CorC family transporter -
  ACLF73_RS06295 (ACLF73_06295) - 1309215..1311632 (+) 2418 WP_168611873.1 GcvT family protein -
  ACLF73_RS06300 (ACLF73_06300) ssb 1311746..1312282 (-) 537 WP_412073722.1 single-stranded DNA-binding protein Machinery gene
  ACLF73_RS06305 (ACLF73_06305) - 1312552..1313127 (+) 576 WP_005617923.1 lytic transglycosylase domain-containing protein -
  ACLF73_RS06310 (ACLF73_06310) - 1313291..1313665 (+) 375 WP_009177250.1 hypothetical protein -
  ACLF73_RS06315 (ACLF73_06315) - 1313804..1314940 (+) 1137 WP_412073723.1 cytochrome-c peroxidase -
  ACLF73_RS06320 (ACLF73_06320) - 1315069..1316484 (+) 1416 WP_009176204.1 tetratricopeptide repeat-containing sulfotransferase family protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18317.92 Da        Isoelectric Point: 5.2795

>NTDB_id=1086681 ACLF73_RS06300 WP_412073722.1 1311746..1312282(-) (ssb) [Tritonibacter mobilis strain Ad19]
MAGSLNKVMLIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFNEGLVRVAEQFLRKGSKVYI
EGQLQTRKWQDQSGQDRYSTEVVLQGFGSTLTMLDGRGEGGGGGGFGGGQGGGDYGGGGGGGYGGGGSYGGGGGGGNQGG
GFGGGGPSQNIDDDEIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1086681 ACLF73_RS06300 WP_412073722.1 1311746..1312282(-) (ssb) [Tritonibacter mobilis strain Ad19]
ATGGCCGGATCCCTGAACAAAGTAATGCTCATTGGCAACCTTGGCCGCGATCCGGAAGTGCGTAGCTTCCAGAACGGCGG
CAAGGTCTGCAACCTGCGGATCGCGACGTCTGAGACGTGGAAGGACCGCAACACCGGTGAGCGCCGTGAAAAAACCGAAT
GGCACTCTGTTGCGATCTTCAACGAAGGTCTGGTGCGTGTCGCAGAGCAATTTCTGCGCAAAGGGTCCAAGGTCTACATC
GAAGGCCAGCTGCAAACCCGCAAGTGGCAGGACCAGAGCGGTCAGGACCGGTATTCTACCGAAGTCGTGCTGCAAGGCTT
TGGCTCGACGCTCACCATGCTTGATGGTCGCGGCGAAGGTGGCGGCGGCGGTGGCTTTGGCGGTGGTCAAGGAGGCGGCG
ATTACGGCGGTGGTGGCGGTGGCGGCTACGGTGGTGGTGGCAGCTACGGCGGCGGCGGTGGCGGCGGCAACCAAGGCGGT
GGCTTTGGTGGCGGTGGCCCCTCGCAAAACATCGACGACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.895

100

0.511
  ssb Vibrio cholerae strain A1552

51.724

97.753

0.506
  ssb Neisseria meningitidis MC58

41.111

100

0.416
  ssb Neisseria gonorrhoeae MS11

41.111

100

0.416

Multiple sequence alignment