Detailed information NTG1086369

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACLD71_RS09285
• Genome accession: NZ_CP177241
• Coordinates: 1957853..1958731 (-)
• Length: 292 a.a.
• NCBI ID: WP_411994343.1
• Uniprot ID: -
• Organism: Agarivorans sp. DSG3-1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1952853..1963731

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLD71_RS09260 (ACLD71_09260)	secA	1953072..1955786 (+)	2715	WP_411994333.1	preprotein translocase subunit SecA	-
ACLD71_RS09265 (ACLD71_09265)	mutT	1955848..1956255 (+)	408	WP_411994335.1	8-oxo-dGTP diphosphatase MutT	-
ACLD71_RS09270 (ACLD71_09270)	yacG	1956252..1956452 (-)	201	WP_411994337.1	DNA gyrase inhibitor YacG	-
ACLD71_RS09275 (ACLD71_09275)	zapD	1956452..1957192 (-)	741	WP_411994339.1	cell division protein ZapD	-
ACLD71_RS09280 (ACLD71_09280)	coaE	1957251..1957853 (-)	603	WP_411994341.1	dephospho-CoA kinase	-
ACLD71_RS09285 (ACLD71_09285)	pilD	1957853..1958731 (-)	879	WP_411994343.1	prepilin peptidase	Machinery gene
ACLD71_RS09290 (ACLD71_09290)	pilC	1958734..1959981 (-)	1248	WP_411994345.1	type II secretion system F family protein	Machinery gene
ACLD71_RS09295 (ACLD71_09295)	pilB	1960068..1961774 (-)	1707	WP_411994347.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACLD71_RS09300 (ACLD71_09300)	-	1961781..1962239 (-)	459	WP_411994349.1	pilin	-
ACLD71_RS09305 (ACLD71_09305)	nadC	1962494..1963333 (-)	840	WP_411994351.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32431.48 Da
• Isoelectric Point: 5.6509

>NTDB_id=1086369 ACLD71_RS09285 WP_411994343.1 1957853..1958731(-) (pilD) [Agarivorans sp. DSG3-1]
MQTFIELYPATALGFCLLIALCIGSFLNVVIHRLPIMLQREWTTECRSFLADELKDNSESEADTYNLMVPRSACPSCNSL
ITAWQNIPVVSWLILRGKCATCKAPISARYPLVELASGLLTLACWWQFGLSLPFVFASLFCIILLCLTMIDLDTMYLPDQ
ITLPTLWLGLLINLDTGFVSLNDAVLGAAIGYGFLWSLFWVFKLLTGKEGMGYGDFKLLAMIGAWFGWQALPLTILLSSF
AGAAIGIGLIVFRKHQQSKPIPFGPYLALGALCYLFFGDTIHTWYFSYLGIA

Nucleotide

• Length: 879 bp

>NTDB_id=1086369 ACLD71_RS09285 WP_411994343.1 1957853..1958731(-) (pilD) [Agarivorans sp. DSG3-1]
ATGCAAACCTTTATTGAACTCTACCCAGCCACTGCGCTGGGTTTCTGCTTATTAATAGCCTTATGCATTGGCTCTTTTTT
AAATGTGGTGATTCACCGCTTACCTATAATGTTGCAGCGAGAGTGGACAACAGAATGTCGCTCTTTTTTGGCTGATGAGC
TAAAAGATAACTCTGAATCAGAAGCTGACACTTACAACTTAATGGTGCCCCGTTCAGCCTGTCCAAGCTGTAATAGCCTA
ATCACTGCTTGGCAAAATATCCCTGTAGTCAGTTGGTTAATTCTTCGAGGAAAGTGTGCGACTTGTAAAGCACCAATCAG
TGCTCGTTACCCTCTAGTAGAGCTAGCTTCAGGCTTATTAACTCTGGCGTGTTGGTGGCAATTTGGACTTAGTTTACCCT
TTGTTTTTGCTAGTCTGTTTTGCATCATTTTACTCTGCCTCACCATGATTGATTTAGATACCATGTATTTGCCCGATCAA
ATCACTCTACCGACCTTATGGTTAGGTTTGCTCATCAACTTGGATACGGGCTTTGTTAGTTTGAACGACGCAGTGCTTGG
TGCGGCTATCGGTTATGGCTTTTTATGGAGTTTATTTTGGGTATTTAAACTACTCACAGGTAAAGAAGGTATGGGTTACG
GTGATTTCAAACTGCTAGCGATGATAGGCGCTTGGTTTGGCTGGCAAGCTCTGCCCCTAACCATCCTGTTATCTTCATTT
GCCGGAGCAGCGATCGGTATTGGGCTAATTGTGTTTCGCAAACACCAACAAAGCAAACCTATTCCATTTGGCCCTTATCT
CGCTTTAGGGGCGCTTTGCTATTTATTCTTTGGTGACACTATTCATACTTGGTACTTTTCTTACCTTGGAATTGCCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	48.123	100	0.483
pilD	Vibrio cholerae strain A1552	49.632	93.151	0.462
pilD	Acinetobacter baumannii D1279779	46.341	98.288	0.455
pilD	Acinetobacter nosocomialis M2	45.455	97.945	0.445
pilD	Neisseria gonorrhoeae MS11	47.407	92.466	0.438