Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACLCD0_RS14315 Genome accession   NZ_CP177228
Coordinates   2872066..2872581 (-) Length   171 a.a.
NCBI ID   WP_394408950.1    Uniprot ID   -
Organism   Sulfitobacter faviae strain P51     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2867066..2877581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLCD0_RS14290 (ACLCD0_14290) - 2867205..2868185 (-) 981 WP_394408920.1 site-specific tyrosine recombinase XerD -
  ACLCD0_RS14295 (ACLCD0_14295) - 2868185..2869831 (-) 1647 WP_411974995.1 hypothetical protein -
  ACLCD0_RS14300 (ACLCD0_14300) - 2869837..2869986 (-) 150 WP_007120408.1 hypothetical protein -
  ACLCD0_RS14305 (ACLCD0_14305) - 2870067..2870663 (+) 597 WP_067266987.1 shikimate kinase -
  ACLCD0_RS14310 (ACLCD0_14310) aroB 2870656..2871771 (+) 1116 WP_411974996.1 3-dehydroquinate synthase -
  ACLCD0_RS14315 (ACLCD0_14315) ssb 2872066..2872581 (-) 516 WP_394408950.1 single-stranded DNA-binding protein Machinery gene
  ACLCD0_RS14320 (ACLCD0_14320) - 2872862..2873407 (+) 546 WP_271689979.1 lytic transglycosylase domain-containing protein -
  ACLCD0_RS14325 (ACLCD0_14325) - 2873588..2874115 (+) 528 WP_209218906.1 hypothetical protein -
  ACLCD0_RS14330 (ACLCD0_14330) - 2874222..2876312 (-) 2091 WP_411974997.1 dipeptide ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 17603.17 Da        Isoelectric Point: 5.2704

>NTDB_id=1086294 ACLCD0_RS14315 WP_394408950.1 2872066..2872581(-) (ssb) [Sulfitobacter faviae strain P51]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFQEGLVRVAEQYLKKGSKVYI
EGQLQTRKWQDQSGADRYSTEVVLQGFGGTLTMLDGPGGGSGGGGGGGGYGGGGGGGYGGGGNDYGYDSGPSSSGGGGGG
GSRDLDDEIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1086294 ACLCD0_RS14315 WP_394408950.1 2872066..2872581(-) (ssb) [Sulfitobacter faviae strain P51]
ATGGCCGGCTCAGTGAACAAAGTGATCCTTATCGGCAACCTCGGGCGCGACCCGGAGGTGCGGTCGTTCCAGAACGGCGG
CAAAGTGTGCAACCTGCGCATCGCCACCTCGGAGACATGGAAAGACCGCAACACCGGTGAGCGCCGCGAGAAGACCGAAT
GGCATTCGGTGGCGATCTTTCAAGAAGGGCTCGTCCGCGTGGCCGAGCAATACCTCAAGAAGGGCTCCAAAGTGTATATC
GAGGGCCAGTTGCAGACCCGCAAATGGCAGGACCAATCGGGCGCAGACCGCTATAGCACCGAAGTCGTGCTGCAAGGCTT
CGGCGGCACGCTGACCATGCTCGACGGTCCCGGCGGCGGCTCCGGCGGCGGCGGTGGTGGCGGCGGCTACGGTGGTGGCG
GCGGTGGCGGCTACGGCGGTGGCGGCAACGACTACGGCTATGACAGCGGCCCGTCCTCTTCGGGCGGCGGTGGCGGCGGC
GGTAGCCGTGACCTCGATGATGAGATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.601

100

0.532
  ssb Glaesserella parasuis strain SC1401

45.699

100

0.497
  ssb Neisseria gonorrhoeae MS11

40.223

100

0.421
  ssb Neisseria meningitidis MC58

40.223

100

0.421

Multiple sequence alignment