Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACK56M_RS02815 Genome accession   NZ_CP177209
Coordinates   606992..607534 (+) Length   180 a.a.
NCBI ID   WP_085721415.1    Uniprot ID   -
Organism   Pseudomonas sp. s4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 601992..612534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK56M_RS02800 (ACK56M_02800) bfr 602023..602487 (+) 465 WP_003257116.1 bacterioferritin -
  ACK56M_RS02805 (ACK56M_02805) uvrA 602624..605458 (-) 2835 WP_013970642.1 excinuclease ABC subunit UvrA -
  ACK56M_RS02810 (ACK56M_02810) - 605588..606982 (+) 1395 WP_015268752.1 MFS transporter -
  ACK56M_RS02815 (ACK56M_02815) ssb 606992..607534 (+) 543 WP_085721415.1 single-stranded DNA-binding protein Machinery gene
  ACK56M_RS02820 (ACK56M_02820) - 607678..609060 (-) 1383 WP_061303915.1 PLP-dependent aminotransferase family protein -
  ACK56M_RS02825 (ACK56M_02825) - 609260..610045 (+) 786 WP_043935263.1 sulfite exporter TauE/SafE family protein -
  ACK56M_RS02830 (ACK56M_02830) - 610067..610828 (+) 762 WP_015268755.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19930.04 Da        Isoelectric Point: 5.9286

>NTDB_id=1086175 ACK56M_RS02815 WP_085721415.1 606992..607534(+) (ssb) [Pseudomonas sp. s4]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQSQQQGGDPYNQGGGNYGGGQPQQYNQAPRQQAPRPQQAPQRPAP
QQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=1086175 ACK56M_RS02815 WP_085721415.1 606992..607534(+) (ssb) [Pseudomonas sp. s4]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATATCTGCGCAAAGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGCCGCCCGCAGAGCCAGCAGCAGGGCGGTGACCCGTACAACCAGGGTGGTGGCAACTACGGTG
GCGGCCAGCCGCAGCAGTACAACCAGGCCCCACGCCAGCAGGCCCCGCGCCCGCAACAGGCTCCTCAGCGCCCGGCCCCG
CAGCAGCCAGCCCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.452

100

0.583
  ssb Glaesserella parasuis strain SC1401

45.226

100

0.5
  ssb Neisseria meningitidis MC58

49.18

100

0.5
  ssb Neisseria gonorrhoeae MS11

49.18

100

0.5

Multiple sequence alignment