Detailed information NTG1086141

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACKWD1_RS15440
• Genome accession: NZ_CP177201
• Coordinates: 3304621..3305496 (+)
• Length: 291 a.a.
• NCBI ID: WP_201985191.1
• Uniprot ID: -
• Organism: Aeromonas caviae strain QZ63
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3299621..3310496

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKWD1_RS15420 (ACKWD1_15420)	nadC	3299745..3300608 (+)	864	WP_042864860.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACKWD1_RS15425 (ACKWD1_15425)	-	3300919..3301464 (+)	546	WP_113069552.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
ACKWD1_RS15430 (ACKWD1_15430)	pilB	3301468..3303174 (+)	1707	WP_201985192.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
ACKWD1_RS15435 (ACKWD1_15435)	pilC	3303302..3304543 (+)	1242	WP_143238137.1	type II secretion system F family protein	Machinery gene
ACKWD1_RS15440 (ACKWD1_15440)	pilD	3304621..3305496 (+)	876	WP_201985191.1	prepilin peptidase	Machinery gene
ACKWD1_RS15445 (ACKWD1_15445)	coaE	3305515..3306129 (+)	615	WP_201985190.1	dephospho-CoA kinase	-
ACKWD1_RS15450 (ACKWD1_15450)	zapD	3306167..3306889 (+)	723	WP_010675825.1	cell division protein ZapD	-
ACKWD1_RS15455 (ACKWD1_15455)	yacG	3306900..3307094 (+)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
ACKWD1_RS15460 (ACKWD1_15460)	mutT	3307153..3307557 (-)	405	WP_171864957.1	8-oxo-dGTP diphosphatase MutT	-
ACKWD1_RS15465 (ACKWD1_15465)	-	3307566..3308750 (-)	1185	WP_201985189.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32040.21 Da
• Isoelectric Point: 6.8230

>NTDB_id=1086141 ACKWD1_RS15440 WP_201985191.1 3304621..3305496(+) (pilD) [Aeromonas caviae strain QZ63]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDGEETPPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLCLRGRCRNCHAPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LVGAIIGISLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

• Length: 876 bp

>NTDB_id=1086141 ACKWD1_RS15440 WP_201985191.1 3304621..3305496(+) (pilD) [Aeromonas caviae strain QZ63]
ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGCCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG
GTGACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGTGCCTCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGCTGGAGAACATTCCCCTGCTGAGCTGGCTATGCCTCAGAGGGCGCTGCCGCAACTGCCACGCCCCCAT
TTCGGCTCGCTATCCCCTGGTCGAGCTGCTCACCGCCTTGCTGTCGGTCTCGGTGGCCGCCGCGCTTGCCCCTGGCTGGG
GCACCCTTGCCGCTCTGCTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTATGGGGTGGCCTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGCGGTGAT
CGGTGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTCACCGGCAAGGAAGGGATGGGCT
ACGGCGACTTCAAGCTGCTGGCGGCGCTGGGGGCCTGGCTCGGCTGGCAGGCCCTGCCCATCGTGTTACTGCTCTCCTCC
CTGGTCGGCGCCATCATAGGGATAAGTCTCATCCTGCTGCGCAACCATCATCAGGGCAAACCCATTCCCTTTGGCCCCTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (140-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.458	98.969	0.608
pilD	Vibrio campbellii strain DS40M4	57.586	99.656	0.574
pilD	Acinetobacter baumannii D1279779	52.33	95.876	0.502
pilD	Acinetobacter nosocomialis M2	52.33	95.876	0.502
pilD	Neisseria gonorrhoeae MS11	51.724	89.691	0.464