Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiA   Type   Regulator
Locus tag   ACJVG6_RS02755 Genome accession   NZ_CP177180
Coordinates   540077..542047 (+) Length   656 a.a.
NCBI ID   WP_002886844.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-KRBY     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 535077..547047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVG6_RS02740 - 535795..536691 (+) 897 WP_002884380.1 RluA family pseudouridine synthase -
  ACJVG6_RS02745 pta 536705..537688 (+) 984 WP_002886841.1 phosphate acetyltransferase -
  ACJVG6_RS02750 amiA 537925..539895 (+) 1971 WP_002886843.1 peptide ABC transporter substrate-binding protein Regulator
  ACJVG6_RS02755 amiA 540077..542047 (+) 1971 WP_002886844.1 peptide ABC transporter substrate-binding protein Regulator
  ACJVG6_RS02760 amiC 542108..543601 (+) 1494 WP_002886845.1 ABC transporter permease Regulator
  ACJVG6_RS02765 amiD 543601..544527 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  ACJVG6_RS02770 amiE 544537..545622 (+) 1086 WP_002884363.1 ABC transporter ATP-binding protein Regulator
  ACJVG6_RS02775 amiF 545615..546544 (+) 930 WP_002886847.1 ATP-binding cassette domain-containing protein Regulator

Sequence


Protein


Download         Length: 656 a.a.        Molecular weight: 72928.32 Da        Isoelectric Point: 5.2854

>NTDB_id=1085863 ACJVG6_RS02755 WP_002886844.1 540077..542047(+) (amiA) [Streptococcus salivarius strain MRD-KRBY]
MKKSKWLALAGVSLLSVGVLVACSSKSNTSSNTYNYVYTADPETLDYLISNKGSTTDAVTNGVDGLLENDKYGNLVPSIA
KDWTVSADGLTYTYKLRKGVKWYTSDGEEYAEVTAKDFVTGLKHAADKKTESIYLAKDSVVGLADYFNGTDKDFSKVGVK
ALDDYTLQYTLKQPEPYWNSKMTYSLFWPVNEEFLKSKGDSFGKSTDPSSILYNGPYILKSLTAKSSIELAKNENYWDKK
NVHFDGVKLSFYDASDQESLVRNFTDGAYSQARLYPTSSNFDSVEKQYKDNIFYTQPSADVLGAGVNIDRQSYNHTSKKT
DAEKDSTKKALLNKDFRQSVNFAIDRTAYSAQLNGKKGAALAIRNLLVKPDFVYAGDKSFGDLVTEKMASYGDEWSGVNL
KDSQDGIFNADKAKTEFNKAKEALQADGVQFPIHLDLPVDQAAKTTVARAQSLKQSVEKTLGKENVVVDIHQMSQDDLLN
STLYAANAAAEDWDINISVAWAPDYEDPSTFLDIFKTTASENTKTYMGFDDPNNAAAAQVGLKDFDALVDNAAKETSDLN
VRYERYAEAQAWLEDSSLFMPLMVNKGAAPMVARLTPFSGAYSQVGPKGSDRYFKYLEPQKDVVTKKNYDKARESWLKEK
SKSNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=1085863 ACJVG6_RS02755 WP_002886844.1 540077..542047(+) (amiA) [Streptococcus salivarius strain MRD-KRBY]
ATGAAAAAAAGTAAATGGTTGGCCCTTGCGGGTGTTTCCCTCCTAAGTGTTGGGGTTTTAGTGGCTTGTTCATCAAAATC
AAACACTTCAAGCAATACTTATAACTATGTTTATACTGCTGATCCTGAAACATTGGACTATCTTATTTCCAATAAAGGTT
CAACGACTGATGCTGTGACAAATGGTGTCGATGGCCTTTTGGAAAACGATAAATATGGTAACTTGGTACCTTCTATTGCC
AAGGACTGGACTGTTTCAGCTGATGGTTTGACTTATACTTACAAACTTCGTAAGGGAGTTAAATGGTACACTTCAGATGG
TGAAGAGTATGCAGAAGTAACAGCTAAAGACTTCGTAACAGGTCTTAAGCATGCTGCTGATAAAAAGACAGAGTCAATTT
ACTTGGCAAAAGATTCTGTAGTAGGTCTTGCTGATTATTTCAATGGTACTGATAAAGACTTCTCTAAAGTTGGCGTTAAA
GCTCTTGATGATTACACTCTTCAGTACACACTTAAACAACCAGAACCTTACTGGAATTCTAAGATGACTTATTCTCTCTT
CTGGCCTGTAAATGAAGAGTTTCTTAAGTCAAAAGGGGATAGCTTTGGTAAATCAACAGATCCATCATCTATCCTTTATA
ATGGTCCATATATCCTTAAGTCATTGACAGCTAAATCATCTATCGAGTTGGCTAAAAATGAAAACTATTGGGATAAGAAA
AATGTTCACTTTGACGGCGTTAAACTATCTTTCTACGACGCTTCTGACCAAGAATCGCTTGTCCGTAATTTCACTGACGG
AGCTTATAGTCAAGCACGTCTATATCCAACAAGCTCAAACTTTGATTCAGTAGAAAAACAATATAAAGATAATATCTTCT
ATACACAACCTTCTGCAGATGTTCTTGGTGCTGGTGTTAACATTGACCGTCAGTCTTACAACCATACATCTAAGAAGACA
GATGCTGAGAAGGACTCAACTAAGAAGGCTCTTCTTAACAAGGACTTCCGTCAATCAGTTAACTTCGCTATTGACCGTAC
AGCTTATTCAGCACAACTTAATGGTAAGAAGGGTGCGGCCCTTGCGATTCGTAACCTACTCGTAAAACCTGACTTCGTTT
ATGCTGGTGACAAGTCATTTGGCGATTTGGTAACTGAAAAGATGGCTTCATATGGTGATGAGTGGTCAGGTGTCAACCTT
AAAGACAGTCAAGATGGTATCTTCAACGCTGATAAGGCTAAGACTGAATTTAATAAGGCCAAGGAAGCCCTTCAAGCAGA
TGGTGTTCAATTCCCAATTCACTTGGACCTTCCTGTTGACCAAGCGGCTAAAACAACGGTTGCACGTGCACAATCTTTGA
AACAATCTGTTGAAAAGACACTTGGCAAAGAAAATGTCGTGGTAGATATTCATCAAATGTCTCAAGATGATCTTCTAAAT
AGCACATTGTATGCAGCTAACGCAGCAGCAGAAGACTGGGATATCAATATTTCAGTTGCTTGGGCGCCTGACTACGAAGA
CCCATCAACATTCCTTGATATCTTCAAGACAACAGCTAGTGAGAACACAAAAACTTACATGGGATTTGACGATCCTAATA
ATGCAGCAGCAGCTCAAGTAGGTCTTAAAGACTTTGATGCTTTGGTTGATAATGCAGCTAAAGAAACAAGCGACCTCAAC
GTACGTTATGAACGTTATGCAGAGGCACAAGCCTGGTTGGAAGATAGCTCACTCTTCATGCCACTTATGGTTAACAAGGG
CGCTGCTCCAATGGTAGCTCGTTTGACACCATTCTCAGGTGCTTACTCTCAAGTAGGACCTAAGGGTTCTGACAGATACT
TCAAGTACCTTGAACCTCAAAAAGATGTTGTCACTAAGAAAAACTATGATAAAGCTCGCGAAAGCTGGCTTAAAGAAAAG
TCTAAGTCCAACGAAAAAGCTCAAAAAGACCTTGAGAAACACGTTAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

75.305

100

0.753

  amiA3 Streptococcus thermophilus LMG 18311

75.19

100

0.753

  amiA3 Streptococcus thermophilus LMD-9

75.19

100

0.753


Multiple sequence alignment