Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   ACJVG6_RS02760 Genome accession   NZ_CP177180
Coordinates   542108..543601 (+) Length   497 a.a.
NCBI ID   WP_002886845.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-KRBY     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 537108..548601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVG6_RS02750 amiA 537925..539895 (+) 1971 WP_002886843.1 peptide ABC transporter substrate-binding protein Regulator
  ACJVG6_RS02755 amiA 540077..542047 (+) 1971 WP_002886844.1 peptide ABC transporter substrate-binding protein Regulator
  ACJVG6_RS02760 amiC 542108..543601 (+) 1494 WP_002886845.1 ABC transporter permease Regulator
  ACJVG6_RS02765 amiD 543601..544527 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  ACJVG6_RS02770 amiE 544537..545622 (+) 1086 WP_002884363.1 ABC transporter ATP-binding protein Regulator
  ACJVG6_RS02775 amiF 545615..546544 (+) 930 WP_002886847.1 ATP-binding cassette domain-containing protein Regulator
  ACJVG6_RS02780 - 546595..547380 (-) 786 WP_002886848.1 hypothetical protein -
  ACJVG6_RS02785 - 547392..548090 (-) 699 WP_002886849.1 ABC transporter ATP-binding protein -
  ACJVG6_RS02790 - 548095..548472 (-) 378 WP_002886850.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55904.69 Da        Isoelectric Point: 10.0480

>NTDB_id=1085864 ACJVG6_RS02760 WP_002886845.1 542108..543601(+) (amiC) [Streptococcus salivarius strain MRD-KRBY]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKTNYENTIYERMGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVSVITGATLTETIFAFPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1085864 ACJVG6_RS02760 WP_002886845.1 542108..543601(+) (amiC) [Streptococcus salivarius strain MRD-KRBY]
ATGAAAAAATATATTTTATTGAGAACCCTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGA
CTAACTATGAAAATACAATCTATGAACGTATGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCACTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAAGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGCTGGCGTTTGCATCAATTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTACTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATCGGTTGGTCAGTTGTCGGTTCAGGAACTAAGCATAAATATTTGCTTTACTTTAACGG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAACCTTGGTACCTCTTACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACGCAAGGCCAAGGGCAAACACAAAGCTCTGAGGTCAACTTTCCTACTGGTAAGAAGATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCTAGAGATCGTTCTTACTATGGAAATGACCCATACAC
AGCTACCAAGAGTCGCTACCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACGCTTTAAAAACACACTCTTTGATAGTGTATCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATCCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCTATTTGGATTCGTCGTTACATGATCGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAATAAACACATTTTCAAAAATGCTATGGTTTCCTTGGTTTCAGGAATCCCAGCATCTATCGTTAG
TGTTATCACAGGGGCAACTTTGACAGAAACAATCTTCGCCTTCCCTGGTATGGGTAAAATGTTGATTGACTCTGTCCGTG
CTTCAAATAACGCTATGGTTGTGGGTCTTGTATTTATTTTCACAGCCCTCACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATAATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

98.39

100

0.984
  amiC Streptococcus thermophilus LMG 18311

97.787

100

0.978
  amiC Streptococcus thermophilus LMD-9

97.787

100

0.978

Multiple sequence alignment