Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ACJVC4_RS09420 Genome accession   NZ_CP177179
Coordinates   2023899..2025869 (-) Length   656 a.a.
NCBI ID   WP_002886978.1    Uniprot ID   J7TG40
Organism   Streptococcus salivarius strain MRD-NRLLH     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2018899..2030869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVC4_RS09405 - 2019488..2020378 (-) 891 WP_002891966.1 hypothetical protein -
  ACJVC4_RS09410 - 2020434..2021741 (-) 1308 WP_037598506.1 GHKL domain-containing protein -
  ACJVC4_RS09415 gltX 2022208..2023662 (-) 1455 WP_002891968.1 glutamate--tRNA ligase -
  ACJVC4_RS09420 amiA 2023899..2025869 (-) 1971 WP_002886978.1 peptide ABC transporter substrate-binding protein Regulator
  ACJVC4_RS09425 rplA 2026051..2026740 (-) 690 WP_037598508.1 50S ribosomal protein L1 -
  ACJVC4_RS09430 rplK 2026840..2027265 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  ACJVC4_RS09435 - 2027437..2027790 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  ACJVC4_RS09440 - 2027885..2028382 (-) 498 WP_002891970.1 beta-class carbonic anhydrase -
  ACJVC4_RS09445 - 2028534..2029229 (-) 696 WP_037598509.1 TIGR00266 family protein -
  ACJVC4_RS09450 radA 2029318..2030679 (-) 1362 WP_073686093.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72993.80 Da        Isoelectric Point: 4.9590

>NTDB_id=1085825 ACJVC4_RS09420 WP_002886978.1 2023899..2025869(-) (amiA) [Streptococcus salivarius strain MRD-NRLLH]
MKKSKVFLLAAVGLLSVGVLTACSSSSKTSGKTYNYVYGGDPATLDYVSTNKKNMTTAVSNGVDGLFENDQYGNLKPSVA
ENWSVSQDGLTYTYKIRKGIKWYTSDGEEYANVTAKDFVTGLKHAADTNSEAIYLLQNSVKGLNDYLSGANKDFSNVGIK
AVDDYTLQYTLSQPEPYWNSKLTYSVTWPVNGEFLKSKGKDFGKSTDPTSILYNGPYLLKSLTTKSSIEFTKNENYWDKD
NVYFDTVKLTYDDGTDQESLERNFTDGVYNLARLYPTSSNYSKVEKQYKDNIFYTQPGAAVEGVGINIDRQTYGHTSKEN
DQQKTSTKTALLNKDFRQALGFAIDRTNYAAQLNGKEGGSTAVRNIYVKPDFVQADGKDFGTMVMDQLPSYGDEWSGVNL
ADSQDGLYNPEKAKAEFAKAKEALQAEGVQFPIHLDVPVNQSNKIFVNQVQSLKQSIESALGKDNVVLDLHQLSTDDFYN
ITYSASNAAAEDWDLSVGVAWEPDYLDPSTYLDVLKTTNSENTKSFMGYDDPNSQAVEKVGLKEYDQLVDDASKETTDLT
ARYEKYAKAQAWLTDSALYIPTTTYNGAAAVISRIKPFSGAYAQAGDKGSTYYFKYLKSQDDIVTKKQYDSAYKDWLKER
AKSNDKAQKDLAKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=1085825 ACJVC4_RS09420 WP_002886978.1 2023899..2025869(-) (amiA) [Streptococcus salivarius strain MRD-NRLLH]
ATGAAAAAGAGTAAGGTATTTTTACTGGCAGCCGTAGGCCTGTTATCTGTAGGTGTTTTAACGGCTTGCTCGTCATCAAG
TAAGACGTCTGGTAAGACTTATAATTATGTCTACGGTGGCGATCCTGCAACCCTAGACTATGTTTCTACAAATAAGAAAA
ATATGACGACAGCCGTTAGTAACGGTGTTGATGGTTTGTTTGAAAATGACCAATACGGGAATCTAAAACCTTCTGTCGCT
GAAAACTGGTCTGTTTCTCAAGATGGTTTGACCTATACTTACAAGATTCGTAAGGGTATCAAATGGTACACTTCAGACGG
CGAAGAATATGCCAATGTAACAGCTAAAGACTTTGTGACAGGACTTAAGCATGCTGCGGATACAAATTCTGAAGCGATTT
ATTTGCTACAAAACTCAGTTAAGGGCTTGAATGATTACCTTTCAGGTGCCAACAAGGACTTTTCAAATGTAGGTATCAAG
GCTGTTGATGATTACACCTTGCAATATACGCTTAGTCAACCAGAACCTTATTGGAATTCAAAATTGACCTACTCTGTTAC
TTGGCCTGTTAATGGAGAATTCTTGAAATCTAAAGGTAAAGACTTTGGTAAGTCAACAGATCCGACTTCTATTCTCTATA
ACGGTCCATACCTTCTTAAATCTTTGACAACGAAATCATCTATTGAGTTCACCAAGAATGAAAACTATTGGGATAAGGAT
AATGTCTACTTTGATACAGTTAAATTGACTTATGATGATGGTACAGACCAAGAATCCTTGGAACGTAACTTCACAGATGG
AGTCTATAACTTAGCTCGTCTATACCCAACTAGTTCAAACTATTCTAAAGTTGAAAAACAGTACAAAGACAATATTTTCT
ATACACAACCTGGAGCAGCTGTAGAAGGTGTCGGTATTAATATCGATCGTCAAACTTATGGTCATACATCTAAAGAAAAT
GACCAGCAAAAGACATCAACTAAGACAGCTCTTCTTAACAAAGATTTCCGTCAAGCATTAGGTTTTGCTATTGACCGTAC
GAATTATGCTGCACAACTTAACGGTAAAGAGGGTGGTAGTACTGCCGTTCGTAATATCTATGTTAAACCAGACTTTGTTC
AAGCAGATGGTAAAGATTTCGGAACTATGGTAATGGATCAATTACCAAGCTATGGTGATGAGTGGTCTGGTGTGAATCTT
GCAGATAGTCAAGATGGTCTTTATAATCCAGAAAAAGCTAAGGCTGAATTTGCTAAAGCTAAAGAAGCTCTTCAAGCAGA
AGGGGTTCAGTTCCCAATCCATTTGGATGTTCCTGTCAATCAGTCAAATAAAATCTTTGTGAATCAAGTGCAGTCACTTA
AACAATCTATTGAATCCGCTCTTGGAAAAGATAATGTTGTACTTGATCTTCACCAATTGTCAACTGATGATTTCTATAAT
ATTACCTACTCTGCTTCAAATGCAGCTGCAGAGGATTGGGACTTGTCAGTAGGTGTGGCTTGGGAGCCTGATTACCTTGA
TCCATCAACTTATCTTGATGTCTTGAAGACTACAAATAGCGAAAATACTAAGTCCTTCATGGGTTATGACGATCCAAATA
GTCAAGCGGTTGAAAAAGTAGGTCTTAAAGAATATGACCAATTGGTTGATGATGCTTCTAAGGAAACAACAGACTTGACA
GCTCGTTATGAAAAATATGCAAAAGCTCAGGCATGGTTGACGGATAGTGCACTTTATATCCCAACGACTACTTATAACGG
AGCAGCCGCTGTAATTTCTCGTATTAAGCCATTCTCAGGAGCATATGCTCAAGCTGGTGATAAAGGTTCTACATACTACT
TCAAGTATCTTAAATCTCAAGATGATATTGTAACTAAGAAACAATACGACTCAGCTTATAAAGATTGGCTTAAAGAAAGA
GCGAAATCTAATGACAAAGCTCAAAAAGATCTTGCCAAACACGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J7TG40

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

69.665

100

0.697
  amiA3 Streptococcus thermophilus LMD-9

68.493

100

0.686
  amiA3 Streptococcus thermophilus LMG 18311

67.732

100

0.678

Multiple sequence alignment