Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACJVC4_RS09450 Genome accession   NZ_CP177179
Coordinates   2029318..2030679 (-) Length   453 a.a.
NCBI ID   WP_073686093.1    Uniprot ID   A0AAW6D859
Organism   Streptococcus salivarius strain MRD-NRLLH     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2024318..2035679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVC4_RS09425 rplA 2026051..2026740 (-) 690 WP_037598508.1 50S ribosomal protein L1 -
  ACJVC4_RS09430 rplK 2026840..2027265 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  ACJVC4_RS09435 - 2027437..2027790 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  ACJVC4_RS09440 - 2027885..2028382 (-) 498 WP_002891970.1 beta-class carbonic anhydrase -
  ACJVC4_RS09445 - 2028534..2029229 (-) 696 WP_037598509.1 TIGR00266 family protein -
  ACJVC4_RS09450 radA 2029318..2030679 (-) 1362 WP_073686093.1 DNA repair protein RadA Machinery gene
  ACJVC4_RS09455 - 2030691..2031143 (-) 453 WP_002891974.1 isochorismatase family protein -
  ACJVC4_RS09460 - 2031153..2031599 (-) 447 WP_002886985.1 dUTP diphosphatase -
  ACJVC4_RS09465 - 2031806..2032408 (+) 603 WP_002886986.1 NADPH-dependent FMN reductase -
  ACJVC4_RS09470 - 2032427..2033677 (+) 1251 WP_002891978.1 NAD(P)H-dependent oxidoreductase -
  ACJVC4_RS09475 - 2033794..2034585 (+) 792 WP_014635096.1 formate/nitrite transporter family protein -
  ACJVC4_RS09480 - 2034594..2035154 (+) 561 WP_002891982.1 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49463.86 Da        Isoelectric Point: 6.6528

>NTDB_id=1085826 ACJVC4_RS09450 WP_073686093.1 2029318..2030679(-) (radA) [Streptococcus salivarius strain MRD-NRLLH]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSINYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
AIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLHGMKIPEGIQVIGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1085826 ACJVC4_RS09450 WP_073686093.1 2029318..2030679(-) (radA) [Streptococcus salivarius strain MRD-NRLLH]
ATAGCAAAGAAAAAATCAACTTTTGTTTGTCGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGCTGTCCCAACTG
TTCTTCTTGGTCCTCTTTTGAAGAAGAGGTTGAGGTGCAGGAGGTGAAAAATGCCCGTGTCAGTTTGACGGGTGAAAAGT
CTAAACCAACTAAATTAAAAGAAGTATCCTCAATCAATTATGCTCGCATAAAGACTGACATGGATGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGTAGTTTGGTTCTTATTGGAGGAGATCCAGGAATAGGGAAATCAACCCTCCTCTTACA
GGTGTCAACGCAACTGGCTAACAAGGGTACGGTCCTCTATGTATCTGGAGAAGAATCTGCCGAGCAAATCAAATTGCGGA
GTGAACGTTTAGGTGATATTGATAACGAATTTTATCTGTATGCTGAGACCAATATGCAAGCCGTTCGCAGTCAAGTAGAG
GCCATAAAACCCGATTTCCTCATTATCGACTCTATTCAGACCATTATGAGTCCAGAGATTTCTGGCGTTCAAGGTTCTGT
ATCTCAGGTTCGTGAAGTCACTGCTGAACTCATGCAGATTGCCAAAACCAATAACATTGCCACATTTATTGTTGGGCATG
TGACCAAGGAGGGACAGCTGGCTGGACCACGTATGTTGGAACACATGGTGGATACTGTGCTCTATTTTGAGGGGGAACGT
CATCATACCTTCCGTATTTTACGAGCAGTCAAAAACCGTTTTGGTTCAACCAATGAGATTGGGATTTTTGAGATGCAGTC
TGGTGGTTTGGTAGAGGTGCTAAATCCTAGCCAGGTTTTCTTAGAGGAACGCCTAGACGGTGCTACAGGTTCTGCCATTG
TTGTGACAATGGAAGGTAGCAGACCTATCTTAGCTGAAGTTCAAGCCTTGGTGACACCAACCGTCTTTGGTAATGCCAAG
CGGACAACGACGGGACTGGACTTTAACCGTGTCAGCCTCATTATGGCTGTTTTAGAGAAACGTTGTGGCCTTCTTCTCCA
AAATCAAGATGCCTATCTCAAATCGGCTGGTGGTGTCAAATTAGACGAGCCAGCTATTGACCTTGCTGTAGCCGTTGCGA
TTGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCTTTTATAGGAGAAATTGGGTTGACTGGAGAGATTCGC
CGAGTAACTCGCATTGAACAGCGTATTAATGAGGCTGCTAAATTAGGTTTTACTAAGATTTATGCTCCTAAAAATTCGCT
TCATGGCATGAAGATTCCAGAAGGTATCCAGGTTATTGGGGTCACGACGGTAGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.962

100

0.89
  radA Streptococcus pneumoniae D39

88.962

100

0.89
  radA Streptococcus pneumoniae R6

88.962

100

0.89
  radA Streptococcus pneumoniae TIGR4

88.962

100

0.89
  radA Streptococcus mitis NCTC 12261

88.962

100

0.89
  radA Streptococcus mitis SK321

88.962

100

0.89
  radA Bacillus subtilis subsp. subtilis str. 168

61.589

100

0.616

Multiple sequence alignment