Detailed information NTG1085702

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACLB90_RS05205
• Genome accession: NZ_CP177163
• Coordinates: 1238298..1239686 (+)
• Length: 462 a.a.
• NCBI ID: WP_411851926.1
• Uniprot ID: -
• Organism: Stenotrophomonas sp. LGBM10
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1233298..1244686

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLB90_RS05190 (ACLB90_05190)	sucD	1234220..1235095 (-)	876	WP_017356169.1	succinate--CoA ligase subunit alpha	-
ACLB90_RS05195 (ACLB90_05195)	sucC	1235117..1236286 (-)	1170	WP_046273840.1	ADP-forming succinate--CoA ligase subunit beta	-
ACLB90_RS05200 (ACLB90_05200)	-	1236606..1238219 (+)	1614	WP_411851925.1	sensor histidine kinase	-
ACLB90_RS05205 (ACLB90_05205)	pilR	1238298..1239686 (+)	1389	WP_411851926.1	sigma-54-dependent transcriptional regulator	Regulator
ACLB90_RS05210 (ACLB90_05210)	pilB	1239711..1241441 (-)	1731	WP_411851927.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACLB90_RS05215 (ACLB90_05215)	-	1241526..1242398 (-)	873	WP_411851928.1	serine hydrolase domain-containing protein	-
ACLB90_RS05220 (ACLB90_05220)	-	1242425..1243414 (-)	990	WP_411851929.1	methyltransferase family protein	-
ACLB90_RS05225 (ACLB90_05225)	pilA2	1243701..1244138 (-)	438	WP_411851930.1	pilin	Machinery gene

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 50117.48 Da
• Isoelectric Point: 6.5114

>NTDB_id=1085702 ACLB90_RS05205 WP_411851926.1 1238298..1239686(+) (pilR) [Stenotrophomonas sp. LGBM10]
MNDNRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVTEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIAVLRGLVKHALELNNSERAAPPTLAPEQATRLLGESPAMDGLRATIAKVAR
SQAPVYILGESGVGKELVARTIHDQSARAGGPFVPVNCGAIPSELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSIRPVGAATEVAVDVRILSATHKDLGELVEDGRFRHDLYYRINVIELRVPPLRERRSDLP
QLAASILARLARTHERPTPLLAPSALDALAQYHFPGNVRELENILERALALAEGDSIGASDLRLPAPGGHRMAGGAAVAH
QEEAVVDLPAGNGALPTYIEQMERTAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGMD

Nucleotide

• Length: 1389 bp

>NTDB_id=1085702 ACLB90_RS05205 WP_411851926.1 1238298..1239686(+) (pilR) [Stenotrophomonas sp. LGBM10]
ATGAACGACAACCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTACTGACGCTGGGCCGCAT
GGGCCTGCGCATCAGCACGGCGGCCAATCTCGCCGAGGCACGGGAGCTGCTGGCCAGCAATCCCTACGATCTGTGCATCA
CCGACATGCGGCTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCGCCGTGCTGCGCGGACTGGTCAAGCATGCGCTGGAACTCAACAACAGCGAGCGCGCCGCGCCCCCCACGCTGG
CCCCGGAACAGGCCACCCGCCTGCTCGGCGAATCGCCGGCGATGGACGGCCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCACCGGTCTACATCCTCGGCGAATCCGGCGTGGGCAAGGAGCTGGTGGCGCGCACCATCCATGACCAGAGCGC
ACGCGCAGGCGGGCCGTTCGTGCCGGTGAACTGCGGTGCGATCCCCTCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACA
GGAAGGGCAGCTTCAGCGGTGCCCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAGAAGTCGATCCGTCCGGTCGGTGC
GGCCACCGAGGTCGCCGTCGACGTGCGCATCCTCTCGGCTACCCACAAGGACCTGGGCGAGCTGGTCGAGGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAGCTGCGCGTGCCGCCGCTGCGCGAACGCCGCAGCGATCTGCCG
CAGCTGGCCGCCTCGATCCTGGCGCGGCTGGCGCGCACCCATGAACGCCCCACCCCGCTGCTGGCGCCGTCGGCGCTGGA
CGCGCTGGCCCAGTACCACTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTGGAGCGCGCCCTGGCCCTGGCCGAAG
GCGACAGCATCGGTGCCAGCGACCTGCGCCTGCCCGCGCCGGGTGGCCACCGGATGGCCGGGGGCGCCGCCGTGGCGCAC
CAGGAAGAGGCGGTGGTCGACCTGCCGGCCGGCAATGGCGCGCTGCCCACGTACATCGAGCAGATGGAACGCACCGCGAT
CCAGCGCGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAGCTGGGCATCACCTTCCGCGCGCTGCGCT
ACAAGCTCAAGAAGCTGGGCATGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

• Sigma-54 interaction domain (Sigma54_activat) (141-307)

• Response regulator receiver domain (Response_reg) (8-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.227	99.134	0.617
pilR	Acinetobacter baumannii strain A118	49.46	100	0.496