Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACLBNB_RS28520 | Genome accession | NZ_CP177156 |
| Coordinates | 6243905..6244417 (-) | Length | 170 a.a. |
| NCBI ID | WP_009045846.1 | Uniprot ID | A0AB33WX86 |
| Organism | Pseudomonas chlororaphis subsp. aurantiaca strain YL-21 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 6238905..6249417
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLBNB_RS28495 (ACLBNB_28495) | - | 6238999..6239994 (+) | 996 | WP_124312249.1 | lysylphosphatidylglycerol synthase domain-containing protein | - |
| ACLBNB_RS28500 (ACLBNB_28500) | - | 6240066..6240821 (-) | 756 | WP_038575407.1 | alpha/beta hydrolase family protein | - |
| ACLBNB_RS28505 (ACLBNB_28505) | - | 6240811..6241920 (-) | 1110 | WP_124312250.1 | DUF3182 family protein | - |
| ACLBNB_RS28510 (ACLBNB_28510) | - | 6242101..6243108 (-) | 1008 | WP_038575402.1 | GlxA family transcriptional regulator | - |
| ACLBNB_RS28515 (ACLBNB_28515) | - | 6243212..6243766 (+) | 555 | WP_096375573.1 | cysteine hydrolase family protein | - |
| ACLBNB_RS28520 (ACLBNB_28520) | ssb | 6243905..6244417 (-) | 513 | WP_009045846.1 | single-stranded DNA-binding protein | Machinery gene |
| ACLBNB_RS28525 (ACLBNB_28525) | - | 6244427..6245821 (-) | 1395 | WP_124312251.1 | MFS transporter | - |
| ACLBNB_RS28530 (ACLBNB_28530) | uvrA | 6246002..6248836 (+) | 2835 | WP_081359606.1 | excinuclease ABC subunit UvrA | - |
| ACLBNB_RS28535 (ACLBNB_28535) | bfr | 6248930..6249394 (-) | 465 | WP_007924173.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18934.07 Da Isoelectric Point: 5.9455
>NTDB_id=1085599 ACLBNB_RS28520 WP_009045846.1 6243905..6244417(-) (ssb) [Pseudomonas chlororaphis subsp. aurantiaca strain YL-21]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF
Nucleotide
Download Length: 513 bp
>NTDB_id=1085599 ACLBNB_RS28520 WP_009045846.1 6243905..6244417(-) (ssb) [Pseudomonas chlororaphis subsp. aurantiaca strain YL-21]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCACAGCCTTCGCAGGCGCCACAGCGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCGCAACCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTAA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCACAGCCTTCGCAGGCGCCACAGCGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCGCAACCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
58.427 |
100 |
0.612 |
| ssb | Glaesserella parasuis strain SC1401 |
46.392 |
100 |
0.529 |
| ssb | Neisseria meningitidis MC58 |
48.864 |
100 |
0.506 |
| ssb | Neisseria gonorrhoeae MS11 |
48.295 |
100 |
0.5 |