Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACKTXJ_RS03225 | Genome accession | NZ_AP031298 |
| Coordinates | 617636..618100 (+) | Length | 154 a.a. |
| NCBI ID | WP_213430281.1 | Uniprot ID | - |
| Organism | Paenibacillus melissococcoides strain J1TS6 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 612636..623100
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKTXJ_RS03205 (PMJ1TS6_06340) | - | 612718..613923 (+) | 1206 | WP_261944490.1 | IS4 family transposase | - |
| ACKTXJ_RS03210 (PMJ1TS6_06350) | - | 614093..614980 (+) | 888 | WP_213430278.1 | TnsD family Tn7-like transposition protein | - |
| ACKTXJ_RS03215 (PMJ1TS6_06360) | - | 615189..616181 (+) | 993 | WP_213430279.1 | PolC-type DNA polymerase III | - |
| ACKTXJ_RS03220 (PMJ1TS6_06370) | - | 617121..617435 (+) | 315 | WP_213430280.1 | hypothetical protein | - |
| ACKTXJ_RS03225 (PMJ1TS6_06380) | ssbA | 617636..618100 (+) | 465 | WP_213430281.1 | single-stranded DNA-binding protein | Machinery gene |
| ACKTXJ_RS03230 (PMJ1TS6_06390) | - | 618284..618559 (+) | 276 | WP_213430282.1 | hypothetical protein | - |
| ACKTXJ_RS03235 (PMJ1TS6_06410) | - | 618927..619439 (+) | 513 | WP_213430283.1 | hypothetical protein | - |
| ACKTXJ_RS03240 (PMJ1TS6_06420) | - | 619690..620865 (+) | 1176 | WP_213430284.1 | DNA polymerase III subunit beta | - |
| ACKTXJ_RS03245 (PMJ1TS6_06430) | - | 620947..621303 (+) | 357 | WP_213430285.1 | DUF6094 domain-containing protein | - |
| ACKTXJ_RS03250 (PMJ1TS6_06440) | - | 621980..622177 (-) | 198 | WP_213430286.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 17428.25 Da Isoelectric Point: 5.2785
>NTDB_id=108536 ACKTXJ_RS03225 WP_213430281.1 617636..618100(+) (ssbA) [Paenibacillus melissococcoides strain J1TS6]
MLNRVILIGRLVRDPELRYTPNGVAVTQMTLAVDRPFANGQGEREADFIPIVTWRQLAETCANYLRKGRLTAIEGRIQVR
HYDNNEGKRVYVTEVIADHVRFLESQNSRNGNGRGDQSGSGDAYSDSNQGNRNYQDPFRDDGKPIDISDDDLPF
MLNRVILIGRLVRDPELRYTPNGVAVTQMTLAVDRPFANGQGEREADFIPIVTWRQLAETCANYLRKGRLTAIEGRIQVR
HYDNNEGKRVYVTEVIADHVRFLESQNSRNGNGRGDQSGSGDAYSDSNQGNRNYQDPFRDDGKPIDISDDDLPF
Nucleotide
Download Length: 465 bp
>NTDB_id=108536 ACKTXJ_RS03225 WP_213430281.1 617636..618100(+) (ssbA) [Paenibacillus melissococcoides strain J1TS6]
ATGTTAAATCGTGTGATTTTGATTGGTCGTTTGGTTAGAGATCCAGAATTGAGATATACACCTAATGGAGTGGCCGTAAC
TCAAATGACGCTTGCAGTAGATCGTCCATTTGCCAACGGGCAGGGTGAACGTGAGGCTGATTTCATTCCGATTGTCACCT
GGCGACAGTTAGCAGAAACGTGTGCTAATTATCTTCGAAAAGGGCGTTTAACTGCAATAGAAGGACGGATTCAGGTTCGC
CATTATGATAATAACGAGGGGAAACGTGTATACGTGACAGAGGTGATTGCTGATCACGTACGCTTTCTAGAATCTCAAAA
TAGCAGAAATGGTAACGGACGTGGCGATCAAAGTGGTTCTGGAGATGCTTATTCTGATAGTAACCAGGGTAATAGAAACT
ATCAAGATCCGTTTCGAGATGACGGTAAACCGATAGATATCTCAGATGACGACTTGCCTTTTTAA
ATGTTAAATCGTGTGATTTTGATTGGTCGTTTGGTTAGAGATCCAGAATTGAGATATACACCTAATGGAGTGGCCGTAAC
TCAAATGACGCTTGCAGTAGATCGTCCATTTGCCAACGGGCAGGGTGAACGTGAGGCTGATTTCATTCCGATTGTCACCT
GGCGACAGTTAGCAGAAACGTGTGCTAATTATCTTCGAAAAGGGCGTTTAACTGCAATAGAAGGACGGATTCAGGTTCGC
CATTATGATAATAACGAGGGGAAACGTGTATACGTGACAGAGGTGATTGCTGATCACGTACGCTTTCTAGAATCTCAAAA
TAGCAGAAATGGTAACGGACGTGGCGATCAAAGTGGTTCTGGAGATGCTTATTCTGATAGTAACCAGGGTAATAGAAACT
ATCAAGATCCGTTTCGAGATGACGGTAAACCGATAGATATCTCAGATGACGACTTGCCTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.07 |
100 |
0.604 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
45.294 |
100 |
0.5 |
| ssb | Neisseria gonorrhoeae MS11 |
34.884 |
100 |
0.39 |
| ssb | Glaesserella parasuis strain SC1401 |
31.844 |
100 |
0.37 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
53.774 |
68.831 |
0.37 |