Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   C645_RS05770 Genome accession   NZ_CP008740
Coordinates   1124003..1124668 (-) Length   221 a.a.
NCBI ID   WP_013527272.1    Uniprot ID   A0ABY1VR37
Organism   Haemophilus influenzae 2019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1119003..1129668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C645_RS05750 (C645_05830) ddc 1119933..1121468 (-) 1536 WP_005688379.1 L-2,4-diaminobutyrate decarboxylase -
  C645_RS05755 (C645_05835) - 1121660..1123024 (-) 1365 WP_005688378.1 diaminobutyrate--2-oxoglutarate transaminase -
  C645_RS05760 (C645_05840) rpmG 1123371..1123541 (-) 171 WP_005613503.1 50S ribosomal protein L33 -
  C645_RS05765 (C645_05845) rpmB 1123553..1123789 (-) 237 WP_005542826.1 50S ribosomal protein L28 -
  C645_RS05770 (C645_05850) radC 1124003..1124668 (-) 666 WP_013527272.1 RadC family protein Machinery gene
  C645_RS05775 (C645_05855) coaBC 1124832..1126034 (+) 1203 WP_005655942.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  C645_RS05780 (C645_05860) dut 1126082..1126534 (+) 453 WP_005655943.1 dUTP diphosphatase -
  C645_RS05785 (C645_05865) slmA 1126541..1127197 (+) 657 WP_005648000.1 nucleoid occlusion factor SlmA -
  C645_RS05790 (C645_05870) - 1127219..1127470 (+) 252 WP_005647999.1 YheU family protein -
  C645_RS05795 (C645_05875) crp 1127455..1128129 (+) 675 WP_005647998.1 cAMP-activated global transcriptional regulator CRP Regulator

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24969.23 Da        Isoelectric Point: 6.5991

>NTDB_id=108535 C645_RS05770 WP_013527272.1 1124003..1124668(-) (radC) [Haemophilus influenzae 2019]
MENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGSLHALLSADKKAFCSVKGLGITQFIQLQ
AITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTINVSAVYPREIIKEALY
CNAAALILAHNHPSGITEPSYSDQLITKKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL

Nucleotide


Download         Length: 666 bp        

>NTDB_id=108535 C645_RS05770 WP_013527272.1 1124003..1124668(-) (radC) [Haemophilus influenzae 2019]
ATGGAAAACAATGATGAATTAATGCCACGGGAAAAATTGCTGGCATTCGGAGCAAAAGCATTAAGTGATTATGAACTACT
TGCGATTTTTTTACGTACTGGTATCAAAGGTTGTCCTGTTATGTCACTTTCTAAAAATGTATTAACGCATTTTGGTTCCT
TGCACGCTTTACTTTCCGCAGATAAAAAAGCTTTCTGTTCTGTAAAAGGCTTAGGTATTACGCAATTTATTCAACTGCAA
GCGATTACGGAAATGACCAAGCGTTATTTAAAGCAAGATATGTTAAGTACGCCGATTATTAATGATCCTGAAACGGTAAA
ACTTTTTTTACTCACTGAATTGCAACACGAGGAAAGAGAAGTATTTATGGTTTTATTTTTAGATAATCAACATCGTTTGA
TTAAAAAAGAGCGGTTATTTTTAGGTACAATTAATGTATCAGCGGTTTATCCGCGAGAAATTATTAAAGAAGCACTCTAT
TGTAATGCGGCAGCTTTAATTTTGGCACATAATCATCCTTCAGGTATAACGGAGCCGAGTTATTCGGATCAGCTTATTAC
TAAAAAAATTCAAGATGCGGCTGAATTAATGGAAATTCGCGTGCTTGATCATTTAATTGTAGGGAAAAGCGATTGTTATT
CTTTCGCGGAGAATTGTTTATTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(100-218)

UPF0758 N-terminal (UPF0758_N)

(8-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

99.095

100

0.991
  radC Streptococcus pneumoniae TIGR4

37.674

97.285

0.367
  radC Streptococcus pneumoniae R6

37.209

97.285

0.362
  radC Streptococcus pneumoniae D39

37.209

97.285

0.362

Multiple sequence alignment