Detailed information NTG1085325

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACK8HJ_RS21545
• Genome accession: NZ_CP177050
• Coordinates: 4619596..4620441 (+)
• Length: 281 a.a.
• NCBI ID: WP_039858364.1
• Uniprot ID: -
• Organism: Vreelandella titanicae strain RF40
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4614596..4625441

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACK8HJ_RS21525 (ACK8HJ_21525)	-	4615119..4615553 (-)	435	WP_009286595.1	anti-virulence regulator CigR family protein	-
ACK8HJ_RS21530 (ACK8HJ_21530)	-	4615662..4616177 (-)	516	WP_009286594.1	pilin	-
ACK8HJ_RS21535 (ACK8HJ_21535)	pilB	4616419..4618167 (+)	1749	WP_039858366.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACK8HJ_RS21540 (ACK8HJ_21540)	pilC	4618171..4619403 (+)	1233	WP_009286592.1	type II secretion system F family protein	Machinery gene
ACK8HJ_RS21545 (ACK8HJ_21545)	pilD	4619596..4620441 (+)	846	WP_039858364.1	prepilin peptidase	Machinery gene
ACK8HJ_RS21550 (ACK8HJ_21550)	coaE	4620510..4621112 (+)	603	WP_039858363.1	dephospho-CoA kinase	-
ACK8HJ_RS21555 (ACK8HJ_21555)	yacG	4621148..4621381 (+)	234	WP_022523595.1	DNA gyrase inhibitor YacG	-
ACK8HJ_RS21560 (ACK8HJ_21560)	-	4621421..4622308 (+)	888	WP_009286590.1	DNA replication terminus site-binding protein	-
ACK8HJ_RS21565 (ACK8HJ_21565)	-	4622332..4622691 (-)	360	WP_039858361.1	hypothetical protein	-
ACK8HJ_RS21570 (ACK8HJ_21570)	-	4623078..4623323 (+)	246	Protein_4236	helix-turn-helix transcriptional regulator	-
ACK8HJ_RS21575 (ACK8HJ_21575)	-	4623453..4623896 (+)	444	WP_233974113.1	hypothetical protein	-
ACK8HJ_RS21580 (ACK8HJ_21580)	-	4623985..4624359 (-)	375	WP_022523599.1	histone-like nucleoid-structuring protein, MvaT/MvaU family	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 30801.12 Da
• Isoelectric Point: 7.2769

>NTDB_id=1085325 ACK8HJ_RS21545 WP_039858364.1 4619596..4620441(+) (pilD) [Vreelandella titanicae strain RF40]
MHHPPFILWLIVLLIGLCLGSFLNVVITRLPVMLMRGWRNEAREALELSAEHSPRFNLATPGSMCPRCEAPIAWHDNLPL
IGWIKRRGRCAECQTPISVQYPLVEVAGGLLAMAVLALHGLTAESVFVYGACLMLLVLAVIDFRTQLLPDIITLPLLWAG
LLFQLLFQPLMLPSAVIGAMVGYLSLWSFYWLFKLATGKEGMGYGDFKLLAALGAWLGWSFLPLILILSAGLGAIVGIVA
QAYSPNLRGTPFPFGPFLALAGWVALLVGDEIMAMYLNLLM

Nucleotide

• Length: 846 bp

>NTDB_id=1085325 ACK8HJ_RS21545 WP_039858364.1 4619596..4620441(+) (pilD) [Vreelandella titanicae strain RF40]
ATGCATCACCCTCCGTTTATCCTGTGGTTAATCGTTTTATTGATTGGGCTATGCCTGGGCAGTTTTCTAAATGTGGTGAT
TACGCGCCTGCCGGTGATGCTGATGCGTGGCTGGCGTAATGAAGCCCGCGAAGCACTTGAGCTTAGCGCTGAACACTCAC
CACGCTTTAATTTGGCCACACCAGGCTCTATGTGTCCACGCTGTGAAGCCCCCATTGCATGGCACGACAACCTGCCATTG
ATTGGCTGGATAAAGCGCCGCGGCCGCTGCGCTGAGTGCCAAACACCGATTAGCGTTCAATATCCTCTGGTAGAAGTAGC
CGGTGGCTTACTGGCCATGGCGGTGCTAGCGCTCCACGGGCTTACGGCAGAATCAGTCTTCGTCTACGGGGCCTGTCTGA
TGCTGTTAGTGCTCGCCGTGATCGACTTTCGCACCCAGCTTCTCCCCGACATCATCACCCTCCCCTTGCTTTGGGCAGGG
TTACTGTTTCAGCTCCTCTTCCAGCCACTGATGCTGCCAAGTGCCGTTATCGGCGCAATGGTAGGCTATCTTTCACTGTG
GAGCTTTTATTGGCTATTCAAACTGGCCACCGGCAAAGAGGGTATGGGCTATGGCGACTTTAAGCTGCTGGCAGCACTAG
GCGCCTGGCTGGGTTGGAGTTTTTTACCGCTAATATTGATACTTTCCGCAGGGCTTGGGGCCATTGTTGGGATAGTTGCC
CAGGCCTACTCACCTAACCTACGCGGCACACCGTTTCCCTTCGGCCCTTTTCTCGCCCTCGCCGGCTGGGTGGCGTTGTT
AGTCGGTGATGAAATAATGGCAATGTATCTCAACCTGCTTATGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-116)

• Type IV leader peptidase family (Peptidase_A24) (132-238)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	48.929	99.644	0.488
pilD	Acinetobacter baumannii D1279779	47.636	97.865	0.466
pilD	Acinetobacter nosocomialis M2	47.636	97.865	0.466
pilD	Vibrio campbellii strain DS40M4	42.958	100	0.434
pilD	Neisseria gonorrhoeae MS11	44.828	92.883	0.416