Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACLIN3_RS24955 Genome accession   NZ_CP176868
Coordinates   5518215..5518730 (-) Length   171 a.a.
NCBI ID   WP_003232445.1    Uniprot ID   A0A0W0N9K8
Organism   Pseudomonas orientalis strain MPB20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5513215..5523730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIN3_RS24930 (ACLIN3_24930) - 5513705..5514460 (-) 756 WP_411565837.1 alpha/beta hydrolase family protein -
  ACLIN3_RS24935 (ACLIN3_24935) - 5514450..5515559 (-) 1110 WP_411565838.1 DUF3182 family protein -
  ACLIN3_RS24940 (ACLIN3_24940) - 5515730..5516689 (-) 960 WP_411565839.1 GlxA family transcriptional regulator -
  ACLIN3_RS24945 (ACLIN3_24945) - 5516784..5517344 (+) 561 WP_181283562.1 cysteine hydrolase family protein -
  ACLIN3_RS24950 (ACLIN3_24950) tam 5517361..5518122 (-) 762 WP_411565840.1 trans-aconitate 2-methyltransferase -
  ACLIN3_RS24955 (ACLIN3_24955) ssb 5518215..5518730 (-) 516 WP_003232445.1 single-stranded DNA-binding protein Machinery gene
  ACLIN3_RS24960 (ACLIN3_24960) - 5518740..5520134 (-) 1395 WP_124360018.1 MFS transporter -
  ACLIN3_RS24965 (ACLIN3_24965) uvrA 5520313..5523147 (+) 2835 WP_191953582.1 excinuclease ABC subunit UvrA -
  ACLIN3_RS24970 (ACLIN3_24970) bfr 5523214..5523678 (-) 465 WP_065930320.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19015.19 Da        Isoelectric Point: 5.9455

>NTDB_id=1083449 ACLIN3_RS24955 WP_003232445.1 5518215..5518730(-) (ssb) [Pseudomonas orientalis strain MPB20]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1083449 ACLIN3_RS24955 WP_003232445.1 5518215..5518730(-) (ssb) [Pseudomonas orientalis strain MPB20]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGATAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAAGTGGCCGAGATCGCCGGTGAGTACCTGCGCAAAGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAATTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCGCCGCGTCCACAGC
AATCGCGTCCGCAGCCAAGCCAGCAGCCTCAGCGTGAATCCCGCCCGGCGCCACAACAGGCCGCTCCGCAGCCGGCTCCG
GATTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N9K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.614
  ssb Glaesserella parasuis strain SC1401

45.833

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474

Multiple sequence alignment