Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AACH39_RS05640 Genome accession   NZ_AP029060
Coordinates   1193990..1194490 (+) Length   166 a.a.
NCBI ID   WP_215781976.1    Uniprot ID   -
Organism   Paludibacterium sp. THUN1379     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1188990..1199490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH39_RS05625 (THUN1379_10930) - 1189188..1189631 (-) 444 WP_215781979.1 VOC family protein -
  AACH39_RS05630 (THUN1379_10940) uvrA 1189690..1192506 (-) 2817 WP_338621075.1 excinuclease ABC subunit UvrA -
  AACH39_RS05635 (THUN1379_10950) - 1192628..1193989 (+) 1362 WP_215781977.1 MFS transporter -
  AACH39_RS05640 (THUN1379_10960) ssb 1193990..1194490 (+) 501 WP_215781976.1 single-stranded DNA-binding protein Machinery gene
  AACH39_RS05645 (THUN1379_10970) - 1194855..1195619 (+) 765 WP_338621076.1 hypothetical protein -
  AACH39_RS05650 (THUN1379_10980) - 1195707..1196228 (-) 522 WP_338621077.1 TIGR00645 family protein -
  AACH39_RS05655 (THUN1379_10990) - 1196307..1197113 (-) 807 WP_338621078.1 ABC transporter substrate-binding protein -
  AACH39_RS05660 (THUN1379_11000) mdtH 1197244..1198470 (-) 1227 WP_338621079.1 multidrug efflux MFS transporter MdtH -
  AACH39_RS05665 (THUN1379_11010) - 1198566..1199453 (+) 888 WP_338621080.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18126.08 Da        Isoelectric Point: 5.3162

>NTDB_id=108344 AACH39_RS05640 WP_215781976.1 1193990..1194490(+) (ssb) [Paludibacterium sp. THUN1379]
MASVNKVILVGNLGRDPEVRYMPSGDAIATLSIATTDSWMDKSSGQRQEQTEWHRVVFFGKTAEVASQYLKKGSQVYVEG
SIRTRKWQDKETGQDRYSTEIRGDRMQMLGGKSGGGSAPMDGGDDYGYQGGRNDAPPAPAAAPAAPRRQESRPAPKLDDI
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=108344 AACH39_RS05640 WP_215781976.1 1193990..1194490(+) (ssb) [Paludibacterium sp. THUN1379]
ATGGCGTCCGTCAACAAAGTGATTCTCGTCGGCAATCTCGGCCGCGACCCGGAAGTGCGCTACATGCCGTCCGGCGACGC
GATCGCCACCCTGTCGATCGCCACCACCGACAGCTGGATGGACAAATCGTCCGGCCAGCGTCAGGAACAAACCGAATGGC
ACCGCGTGGTGTTCTTCGGCAAAACCGCCGAAGTGGCCTCGCAGTACCTGAAAAAGGGCTCGCAGGTCTACGTTGAAGGT
TCCATCCGCACCCGCAAGTGGCAGGACAAGGAAACCGGCCAGGACCGCTACAGCACCGAAATCCGCGGTGACCGCATGCA
AATGCTGGGTGGCAAGAGCGGCGGCGGCAGCGCCCCGATGGACGGCGGTGACGATTACGGCTATCAGGGTGGCCGCAACG
ACGCCCCGCCGGCACCGGCTGCCGCCCCGGCCGCACCGCGCCGCCAGGAATCGCGCCCGGCACCGAAGCTGGATGATATC
GACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.723

100

0.608
  ssb Vibrio cholerae strain A1552

53.889

100

0.584
  ssb Neisseria gonorrhoeae MS11

50.847

100

0.542
  ssb Neisseria meningitidis MC58

50.282

100

0.536

Multiple sequence alignment