Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ACK8N4_RS25415 | Genome accession | NZ_CP176811 |
| Coordinates | 5419912..5420784 (+) | Length | 290 a.a. |
| NCBI ID | WP_114232522.1 | Uniprot ID | A0A6A9K2W7 |
| Organism | Pseudomonas aeruginosa strain DG-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5414912..5425784
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACK8N4_RS25400 (ACK8N4_25400) | - | 5416391..5416759 (-) | 369 | Protein_5024 | pilin | - |
| ACK8N4_RS25405 (ACK8N4_25405) | pilB | 5416990..5418690 (+) | 1701 | WP_114232520.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACK8N4_RS25410 (ACK8N4_25410) | pilC | 5418694..5419911 (+) | 1218 | WP_114232521.1 | type II secretion system F family protein | Machinery gene |
| ACK8N4_RS25415 (ACK8N4_25415) | pilD | 5419912..5420784 (+) | 873 | WP_114232522.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| ACK8N4_RS25420 (ACK8N4_25420) | coaE | 5420781..5421392 (+) | 612 | WP_033970460.1 | dephospho-CoA kinase | - |
| ACK8N4_RS25425 (ACK8N4_25425) | yacG | 5421389..5421589 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| ACK8N4_RS25430 (ACK8N4_25430) | - | 5421626..5421835 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| ACK8N4_RS25435 (ACK8N4_25435) | - | 5421941..5422630 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| ACK8N4_RS25440 (ACK8N4_25440) | - | 5422627..5423097 (-) | 471 | WP_003103866.1 | hypothetical protein | - |
| ACK8N4_RS25445 (ACK8N4_25445) | - | 5423094..5423519 (-) | 426 | WP_033976385.1 | GNAT family N-acetyltransferase | - |
| ACK8N4_RS25450 (ACK8N4_25450) | - | 5423652..5424281 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| ACK8N4_RS25455 (ACK8N4_25455) | - | 5424278..5424727 (+) | 450 | WP_024914662.1 | MOSC domain-containing protein | - |
| ACK8N4_RS25460 (ACK8N4_25460) | - | 5424753..5424923 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31829.85 Da Isoelectric Point: 7.7068
>NTDB_id=1083227 ACK8N4_RS25415 WP_114232522.1 5419912..5420784(+) (pilD) [Pseudomonas aeruginosa strain DG-1]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLVANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLVANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=1083227 ACK8N4_RS25415 WP_114232522.1 5419912..5420784(+) (pilD) [Pseudomonas aeruginosa strain DG-1]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTTCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAGCG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTCTCCGGCTACGTGGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGGTCGCCAATCATTTCGGTCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTTCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAGCG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTCTCCGGCTACGTGGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGGTCGCCAATCATTTCGGTCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.714 |
96.552 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.921 |
95.862 |
0.469 |