Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACK3B6_RS21385 Genome accession   NZ_CP176792
Coordinates   4179856..4180374 (-) Length   172 a.a.
NCBI ID   WP_010332657.1    Uniprot ID   A0A9Q6ABZ4
Organism   Bacillus halotolerans strain BCP32     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4174856..4185374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK3B6_RS21355 (ACK3B6_21355) - 4175363..4176715 (+) 1353 WP_202853617.1 MFS transporter -
  ACK3B6_RS21360 (ACK3B6_21360) - 4176747..4177301 (-) 555 WP_202853616.1 sugar O-acetyltransferase -
  ACK3B6_RS21365 (ACK3B6_21365) - 4177320..4177700 (-) 381 WP_202853615.1 VOC family protein -
  ACK3B6_RS21370 (ACK3B6_21370) - 4177757..4178692 (-) 936 WP_202853614.1 LacI family DNA-binding transcriptional regulator -
  ACK3B6_RS21375 (ACK3B6_21375) xth 4178754..4179512 (-) 759 WP_416042954.1 exodeoxyribonuclease III -
  ACK3B6_RS21380 (ACK3B6_21380) rpsR 4179574..4179813 (-) 240 WP_010332656.1 30S ribosomal protein S18 -
  ACK3B6_RS21385 (ACK3B6_21385) ssbA 4179856..4180374 (-) 519 WP_010332657.1 single-stranded DNA-binding protein SsbA Machinery gene
  ACK3B6_RS21390 (ACK3B6_21390) rpsF 4180415..4180702 (-) 288 WP_010332658.1 30S ribosomal protein S6 -
  ACK3B6_RS21395 (ACK3B6_21395) ychF 4180813..4181913 (-) 1101 WP_024123566.1 redox-regulated ATPase YchF -
  ACK3B6_RS21400 (ACK3B6_21400) - 4182040..4184043 (-) 2004 WP_202853613.1 molybdopterin-dependent oxidoreductase -
  ACK3B6_RS21405 (ACK3B6_21405) - 4184094..4184300 (-) 207 WP_095712546.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18715.28 Da        Isoelectric Point: 4.7621

>NTDB_id=1083037 ACK3B6_RS21385 WP_010332657.1 4179856..4180374(-) (ssbA) [Bacillus halotolerans strain BCP32]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1083037 ACK3B6_RS21385 WP_010332657.1 4179856..4180374(-) (ssbA) [Bacillus halotolerans strain BCP32]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
CACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCTGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCCTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGGCAGCGTGTCTTCGTGACCGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAG
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTCGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAGCCGATTGATATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

99.419

100

0.994
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

36.066

100

0.384

Multiple sequence alignment