Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AACH71_RS15955 Genome accession   NZ_AP029050
Coordinates   3147611..3148333 (+) Length   240 a.a.
NCBI ID   WP_136653810.1    Uniprot ID   -
Organism   Bacillus stercoris strain BST19     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3142611..3153333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH71_RS15930 (BSB_30560) degS 3142921..3144078 (+) 1158 WP_014665563.1 two-component sensor histidine kinase DegS Regulator
  AACH71_RS15935 (BSB_30570) degU 3144161..3144850 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AACH71_RS15940 (BSB_30580) - 3144948..3145793 (+) 846 WP_136653812.1 DegV family protein -
  AACH71_RS15945 (BSB_30590) comFA 3145900..3147282 (+) 1383 WP_136653811.1 ATP-dependent helicase ComFA Machinery gene
  AACH71_RS15950 (BSB_30600) comFB 3147351..3147647 (+) 297 WP_014665560.1 late competence protein ComFB -
  AACH71_RS15955 (BSB_30610) comFC 3147611..3148333 (+) 723 WP_136653810.1 phosphoribosyltransferase family protein Machinery gene
  AACH71_RS15960 (BSB_30620) - 3148407..3148826 (+) 420 WP_014665558.1 TIGR03826 family flagellar region protein -
  AACH71_RS15965 (BSB_30630) flgM 3148907..3149173 (+) 267 WP_014665557.1 flagellar biosynthesis anti-sigma factor FlgM -
  AACH71_RS15970 (BSB_30640) flgN 3149188..3149670 (+) 483 WP_014665556.1 flagellar protein FlgN -
  AACH71_RS15975 (BSB_30650) flgK 3149689..3151212 (+) 1524 WP_338709468.1 flagellar hook-associated protein FlgK -
  AACH71_RS15980 (BSB_30660) flgL 3151223..3152119 (+) 897 WP_040081667.1 flagellar hook-associated protein FlgL -
  AACH71_RS15985 (BSB_30670) - 3152166..3152741 (+) 576 WP_069838612.1 DUF6470 family protein -
  AACH71_RS15990 (BSB_30680) fliW 3152762..3153193 (+) 432 WP_071582053.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27286.77 Da        Isoelectric Point: 10.1016

>NTDB_id=108291 AACH71_RS15955 WP_136653810.1 3147611..3148333(+) (comFC) [Bacillus stercoris strain BST19]
MPNKAGGGIHKLICLLCDSQFSQAVTWRALFLLKPDEKVCHSCRRKSKKITGSICTICGRPQSVYAVCRDCEAWKLRISH
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
GRPIHHPLIRLNNEKQSKKKKTERLLSARIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=108291 AACH71_RS15955 WP_136653810.1 3147611..3148333(+) (comFC) [Bacillus stercoris strain BST19]
ATGCCAAACAAAGCAGGAGGAGGCATTCATAAACTGATCTGTCTGCTATGCGATTCGCAATTTTCTCAAGCTGTTACATG
GAGAGCTCTTTTTTTATTAAAGCCTGACGAAAAGGTCTGTCATTCCTGTAGAAGAAAATCGAAAAAAATTACAGGATCTA
TCTGCACCATATGCGGCAGACCTCAATCCGTTTATGCGGTATGCAGGGATTGTGAGGCGTGGAAATTAAGGATTAGTCAC
AGCTTGCTGCTCCGCCAAAATCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCTTTTAAAAGCGATTTTTCTTCAACCTTTTCAAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTTCCTATTCCGCTAAGCAAGGAACGGGAAGAGGAGCGCGGATTTAATCAGGCGCAGCTCCTGGCAGAATGTTTA
GGCAGGCCCATCCACCATCCCCTCATCCGCCTGAATAATGAGAAACAGTCTAAGAAAAAGAAAACAGAACGCCTGCTTTC
CGCGCGTATTTTTGATACGAAAAACAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACTTTGCATTTTGCAGCGCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGGCATCTTTTACCTTAATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

91.25

100

0.913

Multiple sequence alignment