Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AACH71_RS15945 Genome accession   NZ_AP029050
Coordinates   3145900..3147282 (+) Length   460 a.a.
NCBI ID   WP_136653811.1    Uniprot ID   -
Organism   Bacillus stercoris strain BST19     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3140900..3152282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH71_RS15925 (BSB_30550) - 3142051..3142704 (-) 654 WP_014665564.1 YigZ family protein -
  AACH71_RS15930 (BSB_30560) degS 3142921..3144078 (+) 1158 WP_014665563.1 two-component sensor histidine kinase DegS Regulator
  AACH71_RS15935 (BSB_30570) degU 3144161..3144850 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AACH71_RS15940 (BSB_30580) - 3144948..3145793 (+) 846 WP_136653812.1 DegV family protein -
  AACH71_RS15945 (BSB_30590) comFA 3145900..3147282 (+) 1383 WP_136653811.1 ATP-dependent helicase ComFA Machinery gene
  AACH71_RS15950 (BSB_30600) comFB 3147351..3147647 (+) 297 WP_014665560.1 late competence protein ComFB -
  AACH71_RS15955 (BSB_30610) comFC 3147611..3148333 (+) 723 WP_136653810.1 phosphoribosyltransferase family protein Machinery gene
  AACH71_RS15960 (BSB_30620) - 3148407..3148826 (+) 420 WP_014665558.1 TIGR03826 family flagellar region protein -
  AACH71_RS15965 (BSB_30630) flgM 3148907..3149173 (+) 267 WP_014665557.1 flagellar biosynthesis anti-sigma factor FlgM -
  AACH71_RS15970 (BSB_30640) flgN 3149188..3149670 (+) 483 WP_014665556.1 flagellar protein FlgN -
  AACH71_RS15975 (BSB_30650) flgK 3149689..3151212 (+) 1524 WP_338709468.1 flagellar hook-associated protein FlgK -
  AACH71_RS15980 (BSB_30660) flgL 3151223..3152119 (+) 897 WP_040081667.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 52404.35 Da        Isoelectric Point: 10.0441

>NTDB_id=108290 AACH71_RS15945 WP_136653811.1 3145900..3147282(+) (comFA) [Bacillus stercoris strain BST19]
MKVPTEKHISFSRELQQTLQSRHLLRTELPFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYFSFYHSFGKD
QLYCRSCIMMGRVSEEVPLYSWKEGDEQNWKSVKLTWDGKLSSGQQKAANILIEAISKREELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKAQNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEERPVFLFVPSVSILEKAAASFKDVNCRTATVHAEDKHRKERVQRFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALIQIAGRTGRHKEHADGDVIFFHYGKTKSMLDAKKHIKEMNGLAAKNE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=108290 AACH71_RS15945 WP_136653811.1 3145900..3147282(+) (comFA) [Bacillus stercoris strain BST19]
GTGAAGGTGCCAACTGAAAAGCACATTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCAAAGCCGTCATTTGCTCAGGAC
TGAGCTCCCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGCTATATCACCGCTGAAAACTCTATATCTATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATTTGGAAAAGAT
CAGCTGTATTGCCGTTCCTGTATCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGGAGATGA
ACAAAACTGGAAGTCTGTTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATATTTTAATTG
AAGCAATATCAAAAAGAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCCGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACTCCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTCATGA
TTTCCACCACGCATCAGCTTTTGCGATATAAAGATGCATTCGATGTTATGATCGTTGATGAGGTTGACGCTTTTCCGTAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCGCAGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTGAAAGAAGAGAGGCCTGTTTTTTTATTCGTTCCCTCCGTTTCTATTCTAGAAAAGGCTGCTGC
GAGCTTTAAAGATGTTAATTGCCGAACCGCGACTGTGCATGCGGAAGACAAGCATAGAAAGGAGAGAGTGCAGCGATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTTACGGTTCCCAAGGTGCAAACAGGTGTA
CTAGGAGCGGAATCTCCTATCTTTACGGAAAGCGCACTTATTCAAATCGCAGGAAGAACCGGCCGGCATAAAGAGCATGC
AGACGGCGATGTCATCTTCTTTCACTACGGCAAAACAAAGAGTATGCTCGATGCAAAAAAGCATATAAAAGAAATGAACG
GATTGGCAGCAAAAAATGAATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

92.174

100

0.922

Multiple sequence alignment