Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AACH71_RS15935 Genome accession   NZ_AP029050
Coordinates   3144161..3144850 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus stercoris strain BST19     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3139161..3149850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH71_RS15915 (BSB_30530) - 3139728..3140804 (+) 1077 WP_014665566.1 MraY family glycosyltransferase -
  AACH71_RS15920 (BSB_30540) tagV 3140876..3142051 (-) 1176 WP_014665565.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  AACH71_RS15925 (BSB_30550) - 3142051..3142704 (-) 654 WP_014665564.1 YigZ family protein -
  AACH71_RS15930 (BSB_30560) degS 3142921..3144078 (+) 1158 WP_014665563.1 two-component sensor histidine kinase DegS Regulator
  AACH71_RS15935 (BSB_30570) degU 3144161..3144850 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AACH71_RS15940 (BSB_30580) - 3144948..3145793 (+) 846 WP_136653812.1 DegV family protein -
  AACH71_RS15945 (BSB_30590) comFA 3145900..3147282 (+) 1383 WP_136653811.1 ATP-dependent helicase ComFA Machinery gene
  AACH71_RS15950 (BSB_30600) comFB 3147351..3147647 (+) 297 WP_014665560.1 late competence protein ComFB -
  AACH71_RS15955 (BSB_30610) comFC 3147611..3148333 (+) 723 WP_136653810.1 phosphoribosyltransferase family protein Machinery gene
  AACH71_RS15960 (BSB_30620) - 3148407..3148826 (+) 420 WP_014665558.1 TIGR03826 family flagellar region protein -
  AACH71_RS15965 (BSB_30630) flgM 3148907..3149173 (+) 267 WP_014665557.1 flagellar biosynthesis anti-sigma factor FlgM -
  AACH71_RS15970 (BSB_30640) flgN 3149188..3149670 (+) 483 WP_014665556.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=108289 AACH71_RS15935 WP_003219701.1 3144161..3144850(+) (degU) [Bacillus stercoris strain BST19]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=108289 AACH71_RS15935 WP_003219701.1 3144161..3144850(+) (degU) [Bacillus stercoris strain BST19]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTTGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGCTCTTACCTTCATCCGAAGGTTACGCATA
ACCTCGTTAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCTGCACATCCTCAACACGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTCTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTGAGCAATATTTTACAAAAAATGAATGTGAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment