Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACLH0J_RS21640 Genome accession   NZ_CP176771
Coordinates   4804932..4807157 (-) Length   741 a.a.
NCBI ID   WP_411388954.1    Uniprot ID   -
Organism   Pseudomonas sp. MPB23     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4799932..4812157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLH0J_RS21605 (ACLH0J_21605) murB 4800320..4801339 (-) 1020 WP_411388948.1 UDP-N-acetylmuramate dehydrogenase -
  ACLH0J_RS21610 (ACLH0J_21610) - 4801336..4801800 (-) 465 WP_411388949.1 low molecular weight protein-tyrosine-phosphatase -
  ACLH0J_RS21615 (ACLH0J_21615) kdsB 4801800..4802564 (-) 765 WP_411388950.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACLH0J_RS21620 (ACLH0J_21620) - 4802561..4802746 (-) 186 WP_003174668.1 Trm112 family protein -
  ACLH0J_RS21625 (ACLH0J_21625) lpxK 4802774..4803784 (-) 1011 WP_411388951.1 tetraacyldisaccharide 4'-kinase -
  ACLH0J_RS21630 (ACLH0J_21630) - 4803784..4804212 (-) 429 WP_411388952.1 ExbD/TolR family protein -
  ACLH0J_RS21635 (ACLH0J_21635) exbB 4804209..4804844 (-) 636 WP_411388953.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACLH0J_RS21640 (ACLH0J_21640) comA 4804932..4807157 (-) 2226 WP_411388954.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACLH0J_RS21645 (ACLH0J_21645) - 4807293..4807808 (+) 516 WP_411388955.1 DUF2062 domain-containing protein -
  ACLH0J_RS21650 (ACLH0J_21650) - 4807812..4809182 (-) 1371 WP_411388956.1 histidine kinase sensor domain-containing protein -
  ACLH0J_RS21655 (ACLH0J_21655) - 4809169..4809897 (-) 729 WP_411388957.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80564.90 Da        Isoelectric Point: 11.0034

>NTDB_id=1082863 ACLH0J_RS21640 WP_411388954.1 4804932..4807157(-) (comA) [Pseudomonas sp. MPB23]
MRTGMFALALGLLALRFLPALPSIGWLIAMPVVALMLLPFRTYPLAFFLLGLSWACISAQSALDDRLKPALDGQTRWVEG
RVTGLPQQTGEGVRFELTDSRSRKAHLPKRIRVFWRGGPEVRSGERWRLAIALKRPFGLLNFHGFDQEAWLLAQRIGATG
SVKDGERLAPARNAWRDSIRQRLMAVDAHGRQAGLTALVLGDGSGLAAEDWQVLQDTGTVHLLVISGQHIGLLAGLVYGL
VAGLARYGCWPRTWPWLPWACGLAFAAALAYGLLAGFGVPVQRACVMVALVLLWRLRFRHLGIWWPLLLALNGVLMLEPL
ASLQPGFWLSFAAVAVLGLAFGGRLGPWSFWHVWTRPQWMIAIGLFPVLLVLGLPISLSAPLANLVAVPWISLVVLPLAL
LGTVLLALPFVGEGLLWLAGGALDGLFMGLAWLAGHVPAWVPTQVAPIYWCISLMGALLLLLPKGVPFRLLGWPMLLLAV
FPPRALVPHGQVEVVQLDVGQGQALILRTRHHTLLYDAGPRSGAFDLGARVVLPSLRKLGVGSLDMMLLSHADADHAGGA
VAIANGMPIKRVVGGETERLPAVLGTQPCVSGEQWRWDGVSFELWQWADAVAGNPKSCVLLVQANGERLLLTGDIDRAAE
QALLGTPLAVSTDWLQAPHHGSRSSSSRAFLQRLAPKSVLISRGRGNAFGHPHLQVLERYRALGSRVYDSAEQGAVRLQL
GAFAPPVVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=1082863 ACLH0J_RS21640 WP_411388954.1 4804932..4807157(-) (comA) [Pseudomonas sp. MPB23]
ATGAGGACAGGGATGTTTGCGCTCGCGCTGGGGCTGTTGGCCTTGCGTTTTTTACCGGCTCTGCCGTCTATCGGCTGGCT
GATAGCGATGCCGGTGGTGGCGCTGATGCTATTGCCGTTTCGCACCTACCCGTTGGCGTTTTTCCTGCTGGGGCTGAGTT
GGGCCTGCATCAGTGCGCAATCGGCACTTGACGATCGCCTGAAGCCGGCATTGGACGGCCAGACACGTTGGGTGGAGGGG
CGGGTCACCGGGTTGCCGCAACAGACGGGCGAGGGGGTGCGTTTTGAGTTGACCGACAGCCGGTCACGCAAGGCGCACTT
GCCTAAGCGCATTCGTGTGTTCTGGCGTGGCGGGCCAGAGGTGCGCAGCGGTGAGCGCTGGCGTCTGGCAATCGCCCTAA
AGCGGCCGTTCGGGCTGCTTAATTTCCATGGTTTTGATCAGGAGGCCTGGCTGCTGGCCCAGCGCATCGGTGCCACGGGC
TCGGTGAAGGACGGTGAGCGGCTGGCACCGGCGCGTAACGCCTGGCGCGACAGCATCCGCCAGCGCCTGATGGCGGTGGA
TGCTCACGGTCGGCAAGCTGGCCTGACTGCCCTGGTGTTGGGCGACGGCTCGGGATTGGCCGCTGAGGATTGGCAAGTAC
TGCAGGACACCGGCACCGTGCATCTGCTGGTGATTTCCGGCCAGCACATCGGCTTGCTGGCAGGCCTGGTCTATGGGCTG
GTGGCCGGCCTGGCGCGCTACGGGTGCTGGCCGCGGACCTGGCCATGGCTGCCTTGGGCGTGTGGCCTGGCATTCGCCGC
GGCGCTGGCCTACGGCCTGTTGGCAGGGTTCGGTGTGCCGGTCCAGCGCGCGTGCGTGATGGTGGCACTGGTGTTGCTGT
GGCGGTTGCGCTTTCGCCATCTGGGGATCTGGTGGCCATTGCTGCTGGCGCTCAATGGGGTGCTGATGCTGGAACCGTTG
GCCAGTTTGCAGCCGGGCTTCTGGTTGTCTTTTGCGGCGGTGGCAGTGCTGGGCCTGGCGTTTGGTGGGCGGCTTGGGCC
TTGGAGTTTCTGGCACGTGTGGACCCGTCCGCAATGGATGATCGCCATCGGCCTGTTTCCTGTGCTGCTGGTGCTCGGGC
TGCCCATCAGCCTGAGTGCGCCGCTGGCCAATCTGGTTGCCGTGCCGTGGATCAGCCTGGTGGTGTTGCCATTGGCGTTG
CTGGGGACTGTGCTGCTGGCGCTGCCGTTCGTGGGGGAGGGCTTGTTGTGGTTGGCCGGTGGGGCGCTGGATGGATTGTT
CATGGGCCTGGCGTGGCTCGCCGGGCATGTGCCGGCGTGGGTGCCGACGCAGGTGGCGCCGATTTACTGGTGCATCAGCC
TGATGGGGGCGCTGCTGTTGCTGTTACCCAAAGGGGTGCCGTTTCGCTTGCTGGGCTGGCCGATGCTGTTGCTGGCAGTG
TTTCCCCCTCGAGCGCTGGTGCCCCATGGGCAGGTGGAGGTCGTGCAATTGGATGTCGGGCAGGGGCAAGCGTTGATCCT
GCGCACGCGTCACCACACGCTGCTCTACGATGCCGGCCCGCGTTCAGGAGCGTTCGACCTGGGCGCGCGGGTGGTGCTGC
CGTCGTTGCGAAAGCTCGGGGTCGGGAGTTTGGACATGATGCTGCTCAGCCACGCCGACGCCGATCATGCCGGCGGCGCG
GTGGCGATTGCCAATGGCATGCCGATCAAGCGTGTCGTCGGCGGGGAAACCGAGAGGTTGCCGGCAGTTCTCGGCACCCA
GCCGTGCGTCAGCGGTGAACAATGGCGGTGGGACGGCGTTTCATTCGAACTCTGGCAGTGGGCTGACGCTGTCGCCGGCA
ATCCGAAATCCTGCGTACTGCTGGTGCAGGCCAACGGCGAGCGCCTGTTGTTGACCGGCGACATCGACCGCGCGGCTGAA
CAGGCGTTGCTCGGCACGCCGTTGGCGGTGTCGACCGATTGGCTGCAAGCACCGCACCACGGCAGCCGAAGCTCTTCATC
CCGGGCCTTTTTGCAGCGGCTGGCGCCCAAGTCAGTGCTGATATCGCGTGGACGTGGCAATGCGTTCGGCCACCCCCATC
TGCAGGTGCTGGAGCGCTATCGGGCATTAGGCAGCCGGGTGTACGACAGCGCGGAGCAGGGCGCCGTGCGCCTGCAACTC
GGGGCCTTTGCACCGCCGGTTGTTGCGCGCAGTCAACGCAGGTTCTGGCGTGAGCGGTTACCCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-680)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.833

97.166

0.591
  comA Ralstonia pseudosolanacearum GMI1000

34.539

100

0.374

Multiple sequence alignment