Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACLH0J_RS21635 Genome accession   NZ_CP176771
Coordinates   4804209..4804844 (-) Length   211 a.a.
NCBI ID   WP_411388953.1    Uniprot ID   -
Organism   Pseudomonas sp. MPB23     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4799209..4809844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLH0J_RS21600 (ACLH0J_21600) - 4799586..4800257 (+) 672 WP_411388947.1 Bax inhibitor-1/YccA family protein -
  ACLH0J_RS21605 (ACLH0J_21605) murB 4800320..4801339 (-) 1020 WP_411388948.1 UDP-N-acetylmuramate dehydrogenase -
  ACLH0J_RS21610 (ACLH0J_21610) - 4801336..4801800 (-) 465 WP_411388949.1 low molecular weight protein-tyrosine-phosphatase -
  ACLH0J_RS21615 (ACLH0J_21615) kdsB 4801800..4802564 (-) 765 WP_411388950.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACLH0J_RS21620 (ACLH0J_21620) - 4802561..4802746 (-) 186 WP_003174668.1 Trm112 family protein -
  ACLH0J_RS21625 (ACLH0J_21625) lpxK 4802774..4803784 (-) 1011 WP_411388951.1 tetraacyldisaccharide 4'-kinase -
  ACLH0J_RS21630 (ACLH0J_21630) - 4803784..4804212 (-) 429 WP_411388952.1 ExbD/TolR family protein -
  ACLH0J_RS21635 (ACLH0J_21635) exbB 4804209..4804844 (-) 636 WP_411388953.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACLH0J_RS21640 (ACLH0J_21640) comA 4804932..4807157 (-) 2226 WP_411388954.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACLH0J_RS21645 (ACLH0J_21645) - 4807293..4807808 (+) 516 WP_411388955.1 DUF2062 domain-containing protein -
  ACLH0J_RS21650 (ACLH0J_21650) - 4807812..4809182 (-) 1371 WP_411388956.1 histidine kinase sensor domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22874.04 Da        Isoelectric Point: 6.8765

>NTDB_id=1082862 ACLH0J_RS21635 WP_411388953.1 4804209..4804844(-) (exbB) [Pseudomonas sp. MPB23]
MWELVKSGGWMMLPIIMSSIAALGIIAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKDKLKALRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1082862 ACLH0J_RS21635 WP_411388953.1 4804209..4804844(-) (exbB) [Pseudomonas sp. MPB23]
GTGTGGGAATTGGTTAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCTATCGCCGCACTCGGCATCATTGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTGACCCCCGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAACTGGACAAGGACAAACTCAAGGCACTGCGAGCCGACTCGCCGCTGGGGGAAATCCTCGCGGCGGGCCTTGCAAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCGGCCCGAGTCATCCATGAACTGGAACGCTATAT
CAACGCGCTCGGCACCATCGCCGCCATGGCGCCATTGCTCGGCCTGCTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GCTCGTTCATGGGCTCGGGGATGACCACTAACGCCGCTGTGCTGGCCGGCGGTATTTCCAAGGCATTGATTACCACGGCG
GCGGGCCTGATGGTCGGTATTCCCTCGGTGTTTTTCCACCGCTTCCTGCAACGGCGCATTGATGAACTGGTGGTCGGTAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGATGTGGACCTGGTTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment