Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACLH0J_RS05975 Genome accession   NZ_CP176771
Coordinates   1317231..1317746 (-) Length   171 a.a.
NCBI ID   WP_078835309.1    Uniprot ID   -
Organism   Pseudomonas sp. MPB23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1304800..1323375 1317231..1317746 within 0


Gene organization within MGE regions


Location: 1304800..1323375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLH0J_RS05935 (ACLH0J_05935) - 1304800..1305962 (+) 1163 WP_340135116.1 IS3 family transposase -
  ACLH0J_RS05940 (ACLH0J_05940) - 1306641..1307987 (+) 1347 WP_411391247.1 CHAT domain-containing protein -
  ACLH0J_RS05945 (ACLH0J_05945) - 1308004..1310841 (+) 2838 WP_411391248.1 AAA family ATPase -
  ACLH0J_RS05950 (ACLH0J_05950) - 1311479..1311772 (+) 294 WP_254989504.1 hypothetical protein -
  ACLH0J_RS05955 (ACLH0J_05955) - 1311953..1312369 (-) 417 WP_254989505.1 hypothetical protein -
  ACLH0J_RS05960 (ACLH0J_05960) - 1312372..1314375 (-) 2004 WP_254989506.1 integrase -
  ACLH0J_RS05965 (ACLH0J_05965) - 1314368..1315885 (-) 1518 WP_254989507.1 site-specific integrase -
  ACLH0J_RS05970 (ACLH0J_05970) - 1315875..1317089 (-) 1215 WP_169866329.1 site-specific integrase -
  ACLH0J_RS05975 (ACLH0J_05975) ssb 1317231..1317746 (-) 516 WP_078835309.1 single-stranded DNA-binding protein Machinery gene
  ACLH0J_RS05980 (ACLH0J_05980) - 1317756..1319150 (-) 1395 WP_411391249.1 MFS transporter -
  ACLH0J_RS05985 (ACLH0J_05985) uvrA 1319329..1322163 (+) 2835 WP_411391250.1 excinuclease ABC subunit UvrA -
  ACLH0J_RS05990 (ACLH0J_05990) - 1322190..1323375 (-) 1186 Protein_1180 ISL3 family transposase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19029.21 Da        Isoelectric Point: 5.9455

>NTDB_id=1082854 ACLH0J_RS05975 WP_078835309.1 1317231..1317746(-) (ssb) [Pseudomonas sp. MPB23]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPTQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1082854 ACLH0J_RS05975 WP_078835309.1 1317231..1317746(-) (ssb) [Pseudomonas sp. MPB23]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAAAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAGATCGCTGGCGAATACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGTGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCCCGTCCACAGCCAACCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCCGCTCCGCAACCGGCTCCG
GATTTCGACAGCTTTGATGACGATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.614
  ssb Glaesserella parasuis strain SC1401

45.833

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474

Multiple sequence alignment