Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACLH0I_RS26345 Genome accession   NZ_CP176770
Coordinates   6048598..6049119 (-) Length   173 a.a.
NCBI ID   WP_003206078.1    Uniprot ID   A0A0F4XIB0
Organism   Pseudomonas sp. MPB03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6043598..6054119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLH0I_RS26325 (ACLH0I_26325) - 6044529..6045860 (-) 1332 WP_411384783.1 IS110 family transposase -
  ACLH0I_RS26330 (ACLH0I_26330) - 6046130..6047125 (-) 996 WP_411385774.1 GlxA family transcriptional regulator -
  ACLH0I_RS26335 (ACLH0I_26335) - 6047224..6047781 (+) 558 WP_411385775.1 cysteine hydrolase family protein -
  ACLH0I_RS26340 (ACLH0I_26340) - 6047871..6048488 (+) 618 WP_411385776.1 hypothetical protein -
  ACLH0I_RS26345 (ACLH0I_26345) ssb 6048598..6049119 (-) 522 WP_003206078.1 single-stranded DNA-binding protein Machinery gene
  ACLH0I_RS26350 (ACLH0I_26350) - 6049129..6050526 (-) 1398 WP_250962635.1 MFS transporter -
  ACLH0I_RS26355 (ACLH0I_26355) uvrA 6050706..6053540 (+) 2835 WP_186729629.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19281.47 Da        Isoelectric Point: 5.9455

>NTDB_id=1082844 ACLH0I_RS26345 WP_003206078.1 6048598..6049119(-) (ssb) [Pseudomonas sp. MPB03]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQQGGNNYQQSAPAPRQQAPRPQSAPQPQRERPAPQQAAPQP
APDFDSFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1082844 ACLH0I_RS26345 WP_003206078.1 6048598..6049119(-) (ssb) [Pseudomonas sp. MPB03]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCGAACGGCAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTGGCCGAGATTGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAGTTGCTCGGTGGCCGTCCACAGGGCGACCAACAGCAAGGTGGCAACAACTACCAGCAGTCGGCTCCGGCCCCGC
GCCAGCAGGCGCCTCGTCCGCAGTCGGCCCCACAGCCACAACGCGAACGCCCGGCCCCACAACAGGCCGCGCCGCAGCCG
GCTCCGGATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F4XIB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.044

100

0.59
  ssb Neisseria gonorrhoeae MS11

47.568

100

0.509
  ssb Glaesserella parasuis strain SC1401

48.352

100

0.509
  ssb Neisseria meningitidis MC58

48.045

100

0.497

Multiple sequence alignment