Detailed information NTG1082840

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACLH0I_RS25095
• Genome accession: NZ_CP176770
• Coordinates: 5771089..5771958 (+)
• Length: 289 a.a.
• NCBI ID: WP_411385657.1
• Uniprot ID: -
• Organism: Pseudomonas sp. MPB03
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5766089..5776958

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLH0I_RS25070 (ACLH0I_25070)	-	5766294..5766590 (+)	297	WP_250964595.1	DUF2845 domain-containing protein	-
ACLH0I_RS25075 (ACLH0I_25075)	-	5766902..5767255 (-)	354	WP_411385653.1	BON domain-containing protein	-
ACLH0I_RS25080 (ACLH0I_25080)	-	5767526..5767942 (-)	417	WP_411385654.1	pilin	-
ACLH0I_RS25085 (ACLH0I_25085)	pilB	5768167..5769867 (+)	1701	WP_411385655.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACLH0I_RS25090 (ACLH0I_25090)	pilC	5769870..5771087 (+)	1218	WP_411385656.1	type II secretion system F family protein	Machinery gene
ACLH0I_RS25095 (ACLH0I_25095)	pilD	5771089..5771958 (+)	870	WP_411385657.1	prepilin peptidase	Machinery gene
ACLH0I_RS25100 (ACLH0I_25100)	coaE	5771971..5772594 (+)	624	WP_411385658.1	dephospho-CoA kinase	-
ACLH0I_RS25105 (ACLH0I_25105)	yacG	5772591..5772797 (+)	207	WP_186709040.1	DNA gyrase inhibitor YacG	-
ACLH0I_RS25110 (ACLH0I_25110)	-	5772878..5773093 (-)	216	WP_053125334.1	hypothetical protein	-
ACLH0I_RS25115 (ACLH0I_25115)	-	5773157..5773843 (-)	687	WP_411385659.1	energy-coupling factor ABC transporter permease	-
ACLH0I_RS25120 (ACLH0I_25120)	-	5773863..5774276 (-)	414	WP_250964603.1	tautomerase family protein	-
ACLH0I_RS25125 (ACLH0I_25125)	-	5774428..5775321 (+)	894	WP_411385660.1	LysR substrate-binding domain-containing protein	-
ACLH0I_RS25130 (ACLH0I_25130)	-	5775645..5776271 (+)	627	WP_186709015.1	DUF1780 domain-containing protein	-
ACLH0I_RS25135 (ACLH0I_25135)	-	5776268..5776795 (+)	528	WP_411385661.1	MOSC domain-containing protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31864.00 Da
• Isoelectric Point: 7.0172

>NTDB_id=1082840 ACLH0I_RS25095 WP_411385657.1 5771089..5771958(+) (pilD) [Pseudomonas sp. MPB03]
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLDREWRLQAHDLLGLPAEAPGPVYNLMLPHSQCPHCDHRIR
AWENIPVLSYVMLRGRCSSCAAPIGKRYPLTEVACGALSAFVAWHFGFGWQAGMVMVLTWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVPLDQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSALVG
AVIGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF

Nucleotide

• Length: 870 bp

>NTDB_id=1082840 ACLH0I_RS25095 WP_411385657.1 5771089..5771958(+) (pilD) [Pseudomonas sp. MPB03]
ATGCCCTTGAGCGAATTTTTCGTGCTGTATCCCCTGGCTTTCGTGCTCGTTGCGGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCGACCGCGAATGGCGCCTGCAAGCCCACGATCTGCTGGGCC
TGCCGGCTGAGGCCCCGGGCCCGGTCTATAACCTGATGTTGCCGCACTCCCAGTGCCCCCACTGCGACCATCGCATCCGC
GCCTGGGAAAATATCCCCGTGCTCAGCTACGTGATGTTGCGCGGCCGCTGTTCGAGTTGCGCCGCGCCCATTGGCAAGCG
TTACCCCCTGACCGAAGTGGCCTGCGGTGCGTTGTCGGCATTCGTCGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGGCA
TGGTGATGGTGTTGACCTGGGGCCTGCTGGGCATGAGCCTGATCGACGCCGAGCATCAATTGCTGCCCGATACCTTGGTG
CTGCCGTTGTTGTGGCTGGGCTTGATCGTCAACAGCTTCGGCCTGTTCGTTCCTTTGGACCAGGCGATGTGGGGCGCGGT
GGCCGGCTATCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTACGGGGACT
TCAAGCTGCTGGCAATGCTGGGCGCCTGGGGCGGTTGGCAGATCCTGCCGCTGACGCTGCTCTTGTCGGCGCTGGTGGGC
GCCGTTATCGGGGTCATTGTGCTGCGCCTGCGTGACGCTCCCGGGTCGACACAAATCCCCTTTGGGCCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTACTGGCAGTCTGTCGGTTTCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.704	98.27	0.498
pilD	Vibrio campbellii strain DS40M4	49.474	98.616	0.488
pilD	Neisseria gonorrhoeae MS11	46.69	99.308	0.464
pilD	Acinetobacter baumannii D1279779	46.975	97.232	0.457
pilD	Acinetobacter nosocomialis M2	46.263	97.232	0.45