Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACK1LH_RS20940 Genome accession   NZ_CP176757
Coordinates   4132777..4133304 (-) Length   175 a.a.
NCBI ID   WP_029282948.1    Uniprot ID   -
Organism   Metabacillus indicus strain JKLC.Or24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4127777..4138304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1LH_RS20920 (ACK1LH_20920) rplI 4128784..4129230 (-) 447 WP_029566480.1 50S ribosomal protein L9 -
  ACK1LH_RS20925 (ACK1LH_20925) - 4129227..4131206 (-) 1980 WP_029282954.1 DHH family phosphoesterase -
  ACK1LH_RS20930 (ACK1LH_20930) - 4131291..4132220 (-) 930 WP_411334247.1 YybS family protein -
  ACK1LH_RS20935 (ACK1LH_20935) rpsR 4132491..4132730 (-) 240 WP_029282950.1 30S ribosomal protein S18 -
  ACK1LH_RS20940 (ACK1LH_20940) ssbA 4132777..4133304 (-) 528 WP_029282948.1 single-stranded DNA-binding protein Machinery gene
  ACK1LH_RS20945 (ACK1LH_20945) rpsF 4133343..4133630 (-) 288 WP_029282946.1 30S ribosomal protein S6 -
  ACK1LH_RS20950 (ACK1LH_20950) ychF 4133744..4134844 (-) 1101 WP_029282944.1 redox-regulated ATPase YchF -
  ACK1LH_RS20955 (ACK1LH_20955) - 4135081..4135278 (-) 198 WP_029282942.1 DUF951 domain-containing protein -
  ACK1LH_RS20960 (ACK1LH_20960) - 4135275..4136144 (-) 870 WP_411335131.1 mechanosensitive ion channel family protein -
  ACK1LH_RS20965 (ACK1LH_20965) yyaC 4136343..4136966 (+) 624 WP_029282937.1 spore protease YyaC -
  ACK1LH_RS20970 (ACK1LH_20970) - 4136969..4137670 (-) 702 WP_411334248.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19009.69 Da        Isoelectric Point: 4.9528

>NTDB_id=1082811 ACK1LH_RS20940 WP_029282948.1 4132777..4133304(-) (ssbA) [Metabacillus indicus strain JKLC.Or24]
MMNRVVLVGRLTKDPELRYTPAGAAVATFTLAVNRAFTNQQGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRLQSR
SYEDQTGKRVYVTEVVAESVQFLEPKSSGGGNSGGGGNNNYYGGGQGGQGGQQNPFSQNQNQNQNQRNQGRSNFDDDPFA
NDGKPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1082811 ACK1LH_RS20940 WP_029282948.1 4132777..4133304(-) (ssbA) [Metabacillus indicus strain JKLC.Or24]
ATGATGAACCGGGTTGTTTTAGTCGGCAGACTAACAAAAGATCCAGAACTGCGCTACACTCCAGCCGGAGCGGCAGTTGC
TACTTTTACATTAGCTGTAAACCGTGCCTTCACAAACCAGCAGGGCGAAAGAGAAGCGGACTTCATTAACTGTGTCGTAT
GGCGCCGTCCAGCCGAAAACGTTGCAAACTTCCTTAAAAAAGGCAGTCTTGCGGGCGTTGATGGACGTCTTCAGTCACGC
AGCTATGAAGACCAGACTGGCAAGCGCGTATACGTAACCGAAGTGGTTGCAGAAAGCGTCCAGTTCCTTGAGCCTAAAAG
CAGCGGTGGTGGAAACAGCGGCGGTGGCGGAAACAACAATTATTACGGCGGAGGCCAGGGTGGACAAGGCGGACAGCAGA
ATCCATTCAGCCAAAACCAAAATCAAAATCAGAATCAGCGTAATCAAGGGCGTTCGAACTTTGATGACGATCCATTCGCT
AACGATGGAAAGCCGATTGATATCTCTGATGATGACTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

78.286

100

0.783
  ssb Latilactobacillus sakei subsp. sakei 23K

57.143

100

0.571
  ssb Glaesserella parasuis strain SC1401

36.757

100

0.389
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

60.571

0.389

Multiple sequence alignment