Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AACH71_RS12980 Genome accession   NZ_AP029050
Coordinates   2561466..2561984 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus stercoris strain BST19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2556466..2566984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH71_RS12960 (BSB_24750) - 2557540..2557746 (+) 207 WP_003219236.1 DUF951 domain-containing protein -
  AACH71_RS12965 (BSB_24760) - 2557797..2559800 (+) 2004 WP_136654039.1 molybdopterin-dependent oxidoreductase -
  AACH71_RS12970 (BSB_24770) ychF 2559927..2561027 (+) 1101 WP_014666140.1 redox-regulated ATPase YchF -
  AACH71_RS12975 (BSB_24780) rpsF 2561138..2561425 (+) 288 WP_014115888.1 30S ribosomal protein S6 -
  AACH71_RS12980 (BSB_24790) ssbA 2561466..2561984 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  AACH71_RS12985 (BSB_24800) rpsR 2562028..2562267 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  AACH71_RS12990 (BSB_24810) xth 2562328..2563086 (+) 759 WP_136654038.1 exodeoxyribonuclease III -
  AACH71_RS12995 (BSB_24820) - 2563148..2564083 (+) 936 WP_136654037.1 LacI family DNA-binding transcriptional regulator -
  AACH71_RS13000 (BSB_24830) - 2564138..2564518 (+) 381 WP_136654036.1 VOC family protein -
  AACH71_RS13005 (BSB_24840) - 2564536..2565090 (+) 555 WP_136654035.1 sugar O-acetyltransferase -
  AACH71_RS13010 (BSB_24850) - 2565124..2566479 (-) 1356 WP_136654034.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=108280 AACH71_RS12980 WP_003219228.1 2561466..2561984(+) (ssbA) [Bacillus stercoris strain BST19]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=108280 AACH71_RS12980 WP_003219228.1 2561466..2561984(+) (ssbA) [Bacillus stercoris strain BST19]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAATAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTCGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGATGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment