Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACK2V8_RS06605 Genome accession   NZ_CP176669
Coordinates   1303073..1303609 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Shigella dysenteriae strain GTVSS-015     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1298073..1308609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2V8_RS06565 (ACK2V8_06565) - 1298120..1298338 (+) 219 WP_071529412.1 hypothetical protein -
  ACK2V8_RS06570 (ACK2V8_06570) soxR 1298628..1299092 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  ACK2V8_RS06575 (ACK2V8_06575) soxS 1299178..1299501 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ACK2V8_RS06580 (ACK2V8_06580) pdeC 1299504..1299983 (-) 480 Protein_1269 c-di-GMP phosphodiesterase PdeC -
  ACK2V8_RS06595 (ACK2V8_06595) pdeC 1301529..1302263 (-) 735 Protein_1272 c-di-GMP phosphodiesterase PdeC -
  ACK2V8_RS06600 (ACK2V8_06600) - 1302693..1302974 (+) 282 WP_001295689.1 YjcB family protein -
  ACK2V8_RS06605 (ACK2V8_06605) ssb 1303073..1303609 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACK2V8_RS06610 (ACK2V8_06610) uvrA 1303863..1306685 (+) 2823 WP_000357691.1 excinuclease ABC subunit UvrA -
  ACK2V8_RS06615 (ACK2V8_06615) - 1306720..1307076 (-) 357 WP_000155655.1 MmcQ/YjbR family DNA-binding protein -
  ACK2V8_RS06620 (ACK2V8_06620) - 1307080..1307496 (-) 417 WP_000270377.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACK2V8_RS06625 (ACK2V8_06625) aphA 1307607..1308320 (-) 714 WP_005026022.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1082160 ACK2V8_RS06605 WP_000168305.1 1303073..1303609(-) (ssb) [Shigella dysenteriae strain GTVSS-015]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1082160 ACK2V8_RS06605 WP_000168305.1 1303073..1303609(-) (ssb) [Shigella dysenteriae strain GTVSS-015]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment