Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACK2IZ_RS06215 Genome accession   NZ_CP176642
Coordinates   1293939..1294421 (+) Length   160 a.a.
NCBI ID   WP_003535713.1    Uniprot ID   A0A3E3AIM6
Organism   Thomasclavelia ramosa strain SFAD15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1288939..1299421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2IZ_RS06190 - 1289862..1290440 (-) 579 WP_411354346.1 DedA family protein -
  ACK2IZ_RS06195 - 1290412..1291380 (-) 969 WP_307726370.1 Na/Pi cotransporter family protein -
  ACK2IZ_RS06200 ispD 1291486..1292121 (+) 636 WP_003535706.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACK2IZ_RS06205 - 1292122..1293507 (+) 1386 WP_008792600.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  ACK2IZ_RS06210 rpsF 1293642..1293923 (+) 282 WP_003535710.1 30S ribosomal protein S6 -
  ACK2IZ_RS06215 ssb 1293939..1294421 (+) 483 WP_003535713.1 single-stranded DNA-binding protein Machinery gene
  ACK2IZ_RS06220 rpsR 1294439..1294669 (+) 231 WP_003535715.1 30S ribosomal protein S18 -
  ACK2IZ_RS06225 - 1294695..1295792 (-) 1098 WP_029482161.1 tyrosine-type recombinase/integrase -
  ACK2IZ_RS06230 - 1295898..1296584 (-) 687 WP_029482162.1 helix-turn-helix domain-containing protein -
  ACK2IZ_RS06235 - 1296775..1296978 (+) 204 WP_156346888.1 helix-turn-helix domain-containing protein -
  ACK2IZ_RS06240 - 1296984..1297172 (+) 189 WP_029482170.1 hypothetical protein -
  ACK2IZ_RS06245 - 1297165..1298871 (+) 1707 WP_411354347.1 bifunctional DNA primase/polymerase -
  ACK2IZ_RS06250 - 1299028..1299339 (+) 312 WP_029482174.1 plasmid mobilization protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18680.80 Da        Isoelectric Point: 4.6896

>NTDB_id=1081846 ACK2IZ_RS06215 WP_003535713.1 1293939..1294421(+) (ssb) [Thomasclavelia ramosa strain SFAD15]
MINRVVLVGRMTRDPELRRTPQGDAVTSFTLAVNRNFTSRDGQQQADFINCVVWRKPAENVERYCSKGSLVGVEGRIQTR
SYDNTQGQKVYVVEVICDSVQFLETRAARERQPQPQQQMQQPYQQPQNNDNFYDMKTVELEKEFDNSINTYDIMEDDIQF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=1081846 ACK2IZ_RS06215 WP_003535713.1 1293939..1294421(+) (ssb) [Thomasclavelia ramosa strain SFAD15]
ATGATTAATAGAGTAGTCCTAGTAGGACGAATGACTAGAGATCCTGAACTTAGAAGAACACCACAAGGTGATGCGGTTAC
TTCTTTTACTTTAGCGGTAAATCGTAATTTTACAAGCAGAGATGGTCAACAACAAGCAGATTTTATTAATTGTGTTGTGT
GGCGTAAACCTGCTGAAAATGTTGAGAGATATTGTTCTAAGGGAAGTTTAGTTGGTGTTGAAGGAAGAATCCAAACACGT
AGCTATGACAATACTCAAGGTCAAAAGGTATATGTTGTAGAAGTTATTTGTGATAGTGTGCAATTCTTAGAAACAAGAGC
TGCTCGTGAAAGGCAACCACAGCCACAACAACAAATGCAACAACCGTACCAACAACCACAAAATAATGATAATTTCTATG
ATATGAAAACAGTTGAATTAGAAAAAGAATTTGATAATTCAATTAATACATATGATATCATGGAAGATGATATTCAGTTT
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3E3AIM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

46.199

100

0.494
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.094

66.25

0.431
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.39

73.75

0.394

Multiple sequence alignment