Detailed information    

insolico Bioinformatically predicted

Overview


Name   comYH   Type   Machinery gene
Locus tag   ACK2I7_RS00380 Genome accession   NZ_CP176632
Coordinates   74312..75265 (+) Length   317 a.a.
NCBI ID   WP_021001235.1    Uniprot ID   A0AAP6BRI6
Organism   Streptococcus anginosus strain SFAD 40     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 69312..80265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2I7_RS00340 - 70205..70570 (+) 366 WP_003027003.1 DUF1033 family protein -
  ACK2I7_RS00345 comYA 70640..71581 (+) 942 WP_003027001.1 competence type IV pilus ATPase ComGA Machinery gene
  ACK2I7_RS00350 comYB 71523..72545 (+) 1023 WP_041783985.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACK2I7_RS00355 comYC 72542..72859 (+) 318 WP_003028473.1 competence type IV pilus major pilin ComGC Machinery gene
  ACK2I7_RS00360 comYD 72819..73247 (+) 429 WP_021001232.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACK2I7_RS00365 comGE/cglE 73219..73512 (+) 294 WP_021001233.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACK2I7_RS00370 comGF/cglF 73496..73933 (+) 438 WP_041783987.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACK2I7_RS00375 comGG 73914..74240 (+) 327 WP_021001234.1 competence type IV pilus minor pilin ComGG -
  ACK2I7_RS00380 comYH 74312..75265 (+) 954 WP_021001235.1 class I SAM-dependent methyltransferase Machinery gene
  ACK2I7_RS00385 - 75312..76511 (+) 1200 WP_021001236.1 acetate kinase -
  ACK2I7_RS00390 glmS 76863..78677 (+) 1815 WP_003026983.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence


Protein


Download         Length: 317 a.a.        Molecular weight: 36049.93 Da        Isoelectric Point: 4.3472

>NTDB_id=1081684 ACK2I7_RS00380 WP_021001235.1 74312..75265(+) (comYH) [Streptococcus anginosus strain SFAD 40]
MNFEKIEQAYTLLLENVQEIQNDLLTSFYDALIEQNGSYLDGDIELDSVRQNNEKLKALKLSKEEWRRAYQFLLMKAAQT
EPLQANHQFTPDSIGFILTFLIDQLSKKEHIDILEIGSGMGNLAETILNNTKKNVDYLGLELDDLLIDISASIADVMDAK
VSFVQGDAVRPQVLKESDVIISDLPVGFYPDDNIAMRYEVASRQEHTYAHHLLMEQSLKYLKSDGYAIFLAPNDLLTSSQ
SDLLKKWLQKHAQIVAMIALPESLFGNAAYAKTIFVLKKQDEQAIQPFVYALSDLQNQADLLTFSEKFQNWSQESEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1081684 ACK2I7_RS00380 WP_021001235.1 74312..75265(+) (comYH) [Streptococcus anginosus strain SFAD 40]
ATGAATTTTGAAAAAATTGAACAGGCTTATACGCTCTTGTTAGAAAATGTCCAAGAAATCCAAAATGATCTTTTAACGAG
CTTTTATGATGCTTTGATAGAGCAAAATGGCAGCTATTTGGACGGGGATATCGAACTAGATAGTGTTCGGCAGAACAATG
AAAAACTGAAAGCGTTGAAATTAAGTAAAGAAGAATGGCGTCGAGCCTACCAATTTTTGCTGATGAAAGCAGCTCAAACA
GAGCCTTTGCAAGCCAATCATCAATTTACTCCAGATTCTATCGGGTTTATCTTAACTTTTCTCATTGACCAATTGAGTAA
AAAAGAACACATTGATATTTTGGAAATTGGTAGCGGAATGGGGAATTTAGCAGAGACCATTCTCAATAATACAAAGAAAA
ATGTGGATTATCTAGGACTGGAATTGGACGATCTGCTAATTGATATATCAGCCAGTATCGCAGATGTGATGGATGCAAAA
GTTAGTTTTGTGCAAGGTGATGCAGTGCGTCCGCAAGTATTGAAAGAAAGCGATGTGATTATCAGTGATTTACCAGTTGG
CTTTTATCCTGATGATAACATTGCGATGCGCTATGAAGTGGCTAGTAGACAGGAGCATACTTATGCTCATCATTTGTTAA
TGGAACAATCGCTCAAGTATCTCAAATCGGATGGTTATGCTATTTTCCTTGCACCGAATGATTTATTGACTAGTTCGCAA
AGTGATTTATTGAAGAAATGGCTACAAAAGCATGCACAAATAGTTGCAATGATTGCGTTACCAGAGTCTCTTTTTGGAAA
TGCAGCATACGCTAAAACAATTTTTGTACTGAAAAAGCAAGATGAACAAGCTATCCAACCATTTGTTTATGCTTTATCTG
ATTTGCAGAATCAAGCGGATTTATTGACATTTAGCGAAAAGTTTCAAAATTGGAGCCAAGAAAGTGAAATTTAA

Domains


Predicted by InterproScan.

(68-292)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

61.905

99.369

0.615

  comYH Streptococcus mutans UA159

61.587

99.369

0.612


Multiple sequence alignment