Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AACH40_RS16270 Genome accession   NZ_AP029021
Coordinates   3450338..3450871 (+) Length   177 a.a.
NCBI ID   WP_338643292.1    Uniprot ID   -
Organism   Novosphingobium olei strain DW067     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3445338..3455871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH40_RS16240 (NSDW_31960) - 3445553..3446020 (-) 468 WP_338114960.1 YcgN family cysteine cluster protein -
  AACH40_RS16245 (NSDW_31970) - 3446022..3446642 (-) 621 WP_338643289.1 SCO family protein -
  AACH40_RS16250 (NSDW_31980) - 3446724..3447359 (+) 636 WP_338114959.1 ankyrin repeat domain-containing protein -
  AACH40_RS16255 (NSDW_31990) - 3447385..3448050 (+) 666 WP_338643290.1 COQ9 family protein -
  AACH40_RS16260 (NSDW_32000) - 3448131..3448388 (+) 258 WP_169495043.1 FeoA family protein -
  AACH40_RS16265 (NSDW_32010) - 3448393..3450249 (+) 1857 WP_338643291.1 ferrous iron transporter B -
  AACH40_RS16270 (NSDW_32020) ssb 3450338..3450871 (+) 534 WP_338643292.1 single-stranded DNA-binding protein Machinery gene
  AACH40_RS16275 (NSDW_32030) - 3450946..3451689 (-) 744 WP_338643293.1 7-carboxy-7-deazaguanine synthase QueE -
  AACH40_RS16280 (NSDW_32040) - 3451820..3454546 (-) 2727 WP_338643294.1 valine--tRNA ligase -
  AACH40_RS16285 (NSDW_32050) - 3454674..3455804 (+) 1131 WP_338643295.1 ABC transporter permease -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18113.73 Da        Isoelectric Point: 5.9290

>NTDB_id=108135 AACH40_RS16270 WP_338643292.1 3450338..3450871(+) (ssb) [Novosphingobium olei strain DW067]
MAGSVNKVILIGNLGADPEVKSFQNGGRIANLRIATSENWKDRATGERKERTEWHSVVINSEGLVGVVERFLKKGSKVYI
EGQLRTRKWQDQSGNDRYTTEISVGGMGGVLTMLDGPQGGSGGGGMGGGGRSSGGGWNDGGSSGGSRGGGSSGGSSWNQG
GGSSGGFGDDLDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=108135 AACH40_RS16270 WP_338643292.1 3450338..3450871(+) (ssb) [Novosphingobium olei strain DW067]
ATGGCAGGCAGCGTCAACAAGGTCATTCTGATCGGCAATCTCGGCGCCGATCCGGAAGTGAAGAGCTTCCAGAACGGCGG
GCGCATCGCCAACCTGCGCATCGCCACCAGCGAAAACTGGAAGGACCGCGCCACCGGCGAGCGCAAGGAGCGCACCGAGT
GGCATAGCGTGGTGATCAATTCCGAAGGTCTCGTCGGCGTGGTCGAACGCTTTCTGAAGAAGGGCAGCAAGGTCTACATC
GAAGGCCAGTTGCGCACCCGCAAGTGGCAGGACCAGTCGGGCAACGACCGCTACACCACCGAAATCTCGGTCGGCGGCAT
GGGCGGGGTGCTGACCATGCTCGACGGCCCGCAGGGCGGTTCGGGCGGTGGCGGCATGGGCGGCGGTGGCCGTTCGTCCG
GCGGCGGCTGGAACGATGGCGGTTCGTCGGGCGGTTCGCGCGGTGGTGGCTCGTCGGGCGGCAGCAGCTGGAACCAGGGC
GGCGGCTCTTCGGGCGGCTTCGGCGACGATCTGGACGACGACATCCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.864

99.435

0.486
  ssb Glaesserella parasuis strain SC1401

44.792

100

0.486
  ssb Neisseria meningitidis MC58

37.017

100

0.379
  ssb Neisseria gonorrhoeae MS11

36.464

100

0.373

Multiple sequence alignment