Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACKZ7S_RS01925 | Genome accession | NZ_CP176565 |
| Coordinates | 402071..402574 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain V0353 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 398011..425042 | 402071..402574 | within | 0 |
Gene organization within MGE regions
Location: 398011..425042
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKZ7S_RS01895 (ACKZ7S_01895) | - | 398011..398856 (+) | 846 | WP_162636125.1 | ParB/RepB/Spo0J family partition protein | - |
| ACKZ7S_RS01900 (ACKZ7S_01900) | - | 399010..399891 (+) | 882 | WP_000373077.1 | mechanosensitive ion channel family protein | - |
| ACKZ7S_RS01905 (ACKZ7S_01905) | - | 399921..400124 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| ACKZ7S_RS01910 (ACKZ7S_01910) | ychF | 400136..401233 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| ACKZ7S_RS01915 (ACKZ7S_01915) | - | 401319..401510 (-) | 192 | WP_001052483.1 | hypothetical protein | - |
| ACKZ7S_RS01920 (ACKZ7S_01920) | rpsF | 401754..402050 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| ACKZ7S_RS01925 (ACKZ7S_01925) | ssbA | 402071..402574 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| ACKZ7S_RS01930 (ACKZ7S_01930) | rpsR | 402626..402868 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| ACKZ7S_RS01935 (ACKZ7S_01935) | - | 403200..403826 (-) | 627 | WP_162636127.1 | hypothetical protein | - |
| ACKZ7S_RS01940 (ACKZ7S_01940) | - | 403828..404511 (-) | 684 | WP_162636128.1 | DUF3800 domain-containing protein | - |
| ACKZ7S_RS01945 (ACKZ7S_01945) | - | 404514..405728 (-) | 1215 | WP_162636129.1 | tyrosine-type recombinase/integrase | - |
| ACKZ7S_RS01950 (ACKZ7S_01950) | - | 406007..406702 (-) | 696 | WP_000700230.1 | helix-turn-helix domain-containing protein | - |
| ACKZ7S_RS01955 (ACKZ7S_01955) | - | 406847..407059 (+) | 213 | WP_000608987.1 | helix-turn-helix transcriptional regulator | - |
| ACKZ7S_RS01960 (ACKZ7S_01960) | - | 407092..407364 (+) | 273 | WP_001663084.1 | hypothetical protein | - |
| ACKZ7S_RS01965 (ACKZ7S_01965) | - | 407376..407531 (+) | 156 | WP_000784883.1 | hypothetical protein | - |
| ACKZ7S_RS01970 (ACKZ7S_01970) | - | 407516..407719 (+) | 204 | WP_001662724.1 | hypothetical protein | - |
| ACKZ7S_RS01975 (ACKZ7S_01975) | - | 407721..408104 (+) | 384 | WP_001663083.1 | hypothetical protein | - |
| ACKZ7S_RS01980 (ACKZ7S_01980) | tscT | 408105..408401 (+) | 297 | WP_162636130.1 | type II toxin-antitoxin system toxin TscT | - |
| ACKZ7S_RS01985 (ACKZ7S_01985) | - | 408476..410089 (+) | 1614 | WP_001663081.1 | hypothetical protein | - |
| ACKZ7S_RS01990 (ACKZ7S_01990) | - | 410260..411063 (+) | 804 | WP_162636131.1 | bifunctional DNA primase/polymerase | - |
| ACKZ7S_RS01995 (ACKZ7S_01995) | - | 411050..411322 (+) | 273 | WP_111762498.1 | pathogenicity island protein | - |
| ACKZ7S_RS02000 (ACKZ7S_02000) | - | 411324..411965 (+) | 642 | WP_162636132.1 | pathogenicity island protein | - |
| ACKZ7S_RS02005 (ACKZ7S_02005) | - | 412501..412842 (+) | 342 | WP_001190614.1 | hypothetical protein | - |
| ACKZ7S_RS02010 (ACKZ7S_02010) | - | 412854..413432 (+) | 579 | WP_070040342.1 | pathogenicity island protein | - |
| ACKZ7S_RS02015 (ACKZ7S_02015) | - | 413450..413668 (+) | 219 | WP_000853271.1 | capsid morphogenesis B protein | - |
| ACKZ7S_RS02020 (ACKZ7S_02020) | - | 413719..414246 (+) | 528 | WP_162636133.1 | spore coat protein | - |
| ACKZ7S_RS02025 (ACKZ7S_02025) | - | 414249..414590 (+) | 342 | WP_001662732.1 | hypothetical protein | - |
| ACKZ7S_RS02030 (ACKZ7S_02030) | - | 414587..415156 (+) | 570 | WP_162635120.1 | terminase small subunit | - |
| ACKZ7S_RS02035 (ACKZ7S_02035) | add | 415345..416334 (+) | 990 | WP_086037431.1 | adenosine deaminase | - |
| ACKZ7S_RS02040 (ACKZ7S_02040) | - | 416491..416841 (+) | 351 | WP_162636134.1 | complement inhibitor SCIN family protein | - |
| ACKZ7S_RS02045 (ACKZ7S_02045) | vwb | 417102..418604 (+) | 1503 | WP_086037433.1 | von Willebrand factor binding protein Vwb | - |
| ACKZ7S_RS02050 (ACKZ7S_02050) | - | 420101..421039 (-) | 939 | WP_078055966.1 | Abi family protein | - |
| ACKZ7S_RS02055 (ACKZ7S_02055) | - | 421090..421786 (-) | 697 | Protein_408 | tyrosine-type recombinase/integrase | - |
| ACKZ7S_RS02060 (ACKZ7S_02060) | selX | 421992..422603 (+) | 612 | WP_063650641.1 | staphylococcal enterotoxin-like toxin X | - |
| ACKZ7S_RS02065 (ACKZ7S_02065) | - | 422972..423340 (+) | 369 | WP_000849165.1 | YxeA family protein | - |
| ACKZ7S_RS02070 (ACKZ7S_02070) | - | 423521..424093 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| ACKZ7S_RS02075 (ACKZ7S_02075) | - | 424231..424494 (-) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| ACKZ7S_RS02080 (ACKZ7S_02080) | - | 424788..425042 (+) | 255 | WP_000466742.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=1080887 ACKZ7S_RS01925 WP_000934799.1 402071..402574(+) (ssbA) [Staphylococcus aureus strain V0353]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=1080887 ACKZ7S_RS01925 WP_000934799.1 402071..402574(+) (ssbA) [Staphylococcus aureus strain V0353]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |