Detailed information NTG1080838

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: ACK1U3_RS16435
• Genome accession: NZ_CP176537
• Coordinates: 3593627..3595834 (+)
• Length: 735 a.a.
• NCBI ID: WP_409487799.1
• Uniprot ID: -
• Organism: Pseudomonas promysalinigenes strain KZH.chiA
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3588627..3600834

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACK1U3_RS16410 (ACK1U3_16410)	-	3588817..3590343 (-)	1527	WP_409487798.1	hypothetical protein	-
ACK1U3_RS16415 (ACK1U3_16415)	-	3590510..3591133 (+)	624	WP_186476655.1	glutathione S-transferase	-
ACK1U3_RS16420 (ACK1U3_16420)	-	3591266..3592198 (+)	933	WP_060478265.1	ABC transporter ATP-binding protein	-
ACK1U3_RS16425 (ACK1U3_16425)	-	3592195..3592974 (+)	780	WP_060478209.1	ABC transporter permease	-
ACK1U3_RS16430 (ACK1U3_16430)	-	3592858..3593484 (-)	627	WP_155500265.1	DUF2062 domain-containing protein	-
ACK1U3_RS16435 (ACK1U3_16435)	comA	3593627..3595834 (+)	2208	WP_409487799.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ACK1U3_RS16440 (ACK1U3_16440)	exbB	3596032..3596667 (+)	636	WP_186476657.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
ACK1U3_RS16445 (ACK1U3_16445)	-	3596664..3597098 (+)	435	WP_186476658.1	ExbD/TolR family protein	-
ACK1U3_RS16450 (ACK1U3_16450)	lpxK	3597098..3598099 (+)	1002	WP_186476659.1	tetraacyldisaccharide 4'-kinase	-
ACK1U3_RS16455 (ACK1U3_16455)	-	3598153..3598338 (+)	186	WP_003247142.1	Trm112 family protein	-
ACK1U3_RS16460 (ACK1U3_16460)	kdsB	3598335..3599099 (+)	765	WP_409487800.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ACK1U3_RS16465 (ACK1U3_16465)	-	3599099..3599563 (+)	465	WP_060478215.1	low molecular weight protein-tyrosine-phosphatase	-
ACK1U3_RS16470 (ACK1U3_16470)	murB	3599560..3600579 (+)	1020	WP_186476662.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 735 a.a.
• Molecular weight: 79372.36 Da
• Isoelectric Point: 9.9448

>NTDB_id=1080838 ACK1U3_RS16435 WP_409487799.1 3593627..3595834(+) (comA) [Pseudomonas promysalinigenes strain KZH.chiA]
MRTGMFALALGLLCLGFLPVLPSVGWLLLLVLAGACCLLTRLWPLGCFALGLAWACWSAQLSLNDRLEAGLDGRTLWLEG
RVVGLPTRTAQGVRFELQQAHSRRAELPQRLQLSWFDGPPIRAGESWRVVATLQRPAGLLNPHGPDRAAQLLARRIGATG
TVKAGDLTRAVAPDWRDALRERLLRVDAHGQQAGLAALVLGDGAGLAREQWQALQATGTVHLLVISGQHIGLVAGMLYAL
VASLARWGLWPRSWPWLPWACGLALVAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRQLGALLPLLLALTLVLLVDPL
AALLPGFWLSFAAVAILIYSFAGRLGNWRPWQAWTRAQWVIAVGLLPVLLATGLPVSLTAPMANLLAVPWVSVAVLPPAL
LGTLLLPVPGVGEGLLWLAGAALHLLFALLAWVAAWQPAWVPPALPIGPWLLVCLGALLLLLPGGVPLRSLGAVMLLALW
APKPPVPHGQVEVWQLDVGQGLAVLLRTRHHTLLYDAGPAKGDFDLGERVVLPTLRKLGVAGLDLMLISHAHADHAGGAV
AIIKGLPVARVIGGEALEEVHVQPCASSERWTWDGVDFSLWRWESGQSSNDRSCVLLVEAQGERLLLAGDIEAGAERAWL
KAHEAPRIDWLQAPHHGSRSSSTEAFIRATTPHGVLISRGRNNSFGHPHAQVVERYRRYGMVMHDTAVEGALRLVLGAQG
EVESVGRQRRFWRVQ

Nucleotide

• Length: 2208 bp

>NTDB_id=1080838 ACK1U3_RS16435 WP_409487799.1 3593627..3595834(+) (comA) [Pseudomonas promysalinigenes strain KZH.chiA]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTATGCCTGGGCTTTCTCCCGGTATTGCCATCGGTCGGTTGGCT
GTTGTTGCTAGTGCTGGCAGGGGCTTGTTGCCTGCTCACGCGGCTCTGGCCGCTGGGCTGCTTCGCTCTGGGATTAGCCT
GGGCCTGTTGGTCGGCACAGCTGTCATTGAATGACCGGCTAGAGGCTGGTTTGGACGGCCGTACGCTGTGGTTGGAGGGG
CGGGTGGTTGGCTTGCCCACGCGTACTGCGCAGGGCGTGCGTTTTGAGCTGCAACAGGCGCATTCGCGCCGCGCTGAACT
ACCGCAGCGCCTGCAATTGAGCTGGTTCGATGGCCCACCCATTCGTGCTGGCGAGTCTTGGCGTGTGGTGGCGACCTTGC
AGCGCCCGGCAGGGCTGCTCAACCCCCATGGCCCTGATCGAGCGGCGCAGTTGCTGGCCCGGCGTATCGGTGCCACAGGC
ACGGTCAAAGCCGGTGACCTTACCCGCGCGGTGGCCCCCGACTGGCGCGACGCGCTACGTGAGCGGCTACTGAGGGTCGA
CGCCCATGGGCAGCAAGCGGGCTTGGCAGCCTTGGTGCTCGGTGACGGCGCGGGCCTTGCCCGGGAACAGTGGCAGGCGC
TGCAGGCAACTGGCACGGTGCATCTGCTGGTGATTTCTGGGCAACACATTGGCTTGGTCGCCGGCATGCTCTATGCCTTG
GTGGCAAGCCTGGCACGCTGGGGCCTGTGGCCGCGTAGTTGGCCATGGTTACCCTGGGCATGCGGCTTGGCGCTGGTGGC
AGCGCTGGCCTACGGCTGGCTGGCCGGCGCCGGCGTGCCGGTGCAGCGCGCCTGTCTGATGTTGGCAGTTGTGCTGTTAT
GGCGATTGCGGTTTCGGCAGCTGGGGGCGCTGTTGCCGTTGCTGCTGGCACTGACCTTGGTATTGCTGGTCGACCCCTTG
GCTGCGTTATTGCCAGGGTTCTGGCTGTCGTTCGCGGCGGTGGCGATACTCATCTACAGCTTCGCTGGCCGGCTTGGCAA
CTGGCGCCCCTGGCAGGCCTGGACCCGGGCGCAGTGGGTGATTGCCGTCGGTTTACTGCCGGTATTGTTGGCCACAGGGT
TGCCGGTGAGTCTGACTGCGCCGATGGCGAACCTGCTGGCGGTGCCATGGGTGAGCGTGGCGGTGTTGCCCCCGGCTTTG
CTCGGGACCTTGTTGTTGCCAGTGCCGGGGGTAGGGGAGGGTTTGCTATGGCTTGCGGGCGCGGCGCTGCACCTGCTGTT
CGCCCTGCTTGCGTGGGTGGCCGCATGGCAACCGGCATGGGTGCCGCCAGCGCTACCGATAGGGCCCTGGTTGCTGGTGT
GCCTAGGGGCGCTGCTGCTATTGCTGCCTGGCGGCGTGCCGCTGCGCAGCCTGGGCGCGGTCATGTTACTGGCCTTGTGG
GCACCGAAGCCGCCTGTGCCCCATGGGCAGGTCGAGGTGTGGCAGCTCGATGTCGGCCAAGGCCTTGCGGTTTTGCTGCG
TACTCGACATCACACGTTGCTATACGACGCAGGGCCTGCCAAAGGCGATTTCGACCTGGGGGAACGAGTAGTGCTGCCCA
CCCTGCGTAAATTGGGTGTGGCGGGCCTGGACCTGATGCTGATCAGTCACGCGCATGCGGACCACGCCGGTGGCGCCGTG
GCCATCATCAAAGGCTTGCCGGTGGCTCGCGTGATAGGTGGCGAAGCGCTGGAAGAGGTACACGTGCAGCCCTGTGCGTC
CAGTGAACGGTGGACTTGGGACGGCGTGGATTTTTCGCTGTGGCGCTGGGAAAGCGGGCAAAGCAGCAATGATCGTTCCT
GCGTGCTACTGGTCGAGGCGCAAGGTGAGCGTTTGCTGTTGGCCGGCGATATCGAGGCAGGCGCCGAACGCGCCTGGCTC
AAGGCCCATGAAGCGCCACGCATCGACTGGCTTCAGGCCCCGCACCATGGCAGCCGCAGTTCATCCACCGAGGCGTTCAT
CCGTGCCACTACGCCGCATGGGGTGTTGATTTCGCGCGGGCGCAACAACAGCTTCGGGCACCCCCACGCACAAGTGGTCG
AGCGGTATCGGCGCTATGGGATGGTGATGCATGACACTGCTGTGGAGGGTGCGTTGCGGCTGGTGCTCGGTGCGCAGGGT
GAGGTCGAAAGTGTGGGGCGCCAGCGAAGGTTTTGGCGAGTGCAGTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (21-166)

• Metallo-beta-lactamase superfamily (Lactamase_B) (497-674)

• Competence protein (Competence) (198-460)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	57.917	97.959	0.567
comA	Ralstonia pseudosolanacearum GMI1000	34.122	100	0.373