Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACK1U3_RS16440 Genome accession   NZ_CP176537
Coordinates   3596032..3596667 (+) Length   211 a.a.
NCBI ID   WP_186476657.1    Uniprot ID   -
Organism   Pseudomonas promysalinigenes strain KZH.chiA     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3591032..3601667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1U3_RS16420 (ACK1U3_16420) - 3591266..3592198 (+) 933 WP_060478265.1 ABC transporter ATP-binding protein -
  ACK1U3_RS16425 (ACK1U3_16425) - 3592195..3592974 (+) 780 WP_060478209.1 ABC transporter permease -
  ACK1U3_RS16430 (ACK1U3_16430) - 3592858..3593484 (-) 627 WP_155500265.1 DUF2062 domain-containing protein -
  ACK1U3_RS16435 (ACK1U3_16435) comA 3593627..3595834 (+) 2208 WP_409487799.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACK1U3_RS16440 (ACK1U3_16440) exbB 3596032..3596667 (+) 636 WP_186476657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACK1U3_RS16445 (ACK1U3_16445) - 3596664..3597098 (+) 435 WP_186476658.1 ExbD/TolR family protein -
  ACK1U3_RS16450 (ACK1U3_16450) lpxK 3597098..3598099 (+) 1002 WP_186476659.1 tetraacyldisaccharide 4'-kinase -
  ACK1U3_RS16455 (ACK1U3_16455) - 3598153..3598338 (+) 186 WP_003247142.1 Trm112 family protein -
  ACK1U3_RS16460 (ACK1U3_16460) kdsB 3598335..3599099 (+) 765 WP_409487800.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACK1U3_RS16465 (ACK1U3_16465) - 3599099..3599563 (+) 465 WP_060478215.1 low molecular weight protein-tyrosine-phosphatase -
  ACK1U3_RS16470 (ACK1U3_16470) murB 3599560..3600579 (+) 1020 WP_186476662.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22817.09 Da        Isoelectric Point: 7.3616

>NTDB_id=1080839 ACK1U3_RS16440 WP_186476657.1 3596032..3596667(+) (exbB) [Pseudomonas promysalinigenes strain KZH.chiA]
MWELVKSGGWMMLPIILSSVAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVVQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1080839 ACK1U3_RS16440 WP_186476657.1 3596032..3596667(+) (exbB) [Pseudomonas promysalinigenes strain KZH.chiA]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCGTTGCCGCCATGGCGATCGTCGT
CGAACGTCTGTGGACTCTGCGCGCCAGCCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCTTGCGCGCCGACTCGCCACTGGGCGAGATCCTCGCGGCAGGCCTTGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAGGAGTGCATCGAGGAGGCCGCCTCGCGAGTCATTCACGAACTCGAGCGCTACAT
CAGTACCCTCGGCACCATTGCCGCCATGGCGCCACTGCTTGGCCTGCTGGGCACCGTGTTGGGCATGATCGACATCTTCA
GCGCTTTCATGGGCTCGCAAATGACCGCAAATGCCGCCGTGCTGGCCGGGGGCATCTCCAAGGCTCTGGTTACTACCGCA
GCCGGCCTGATGGTGGGGATCCCGGCGGTATTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAGCTGGTAGTGGGCAT
GGAGCAAGAAGCGATCAAACTGGTGGAGGTGGTCCAGGGCGACCGGGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829

Multiple sequence alignment