Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFGDV_RS24120 Genome accession   NZ_CP176528
Coordinates   5183810..5184304 (-) Length   164 a.a.
NCBI ID   WP_136417821.1    Uniprot ID   -
Organism   Noviherbaspirillum sp. ST 5-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5178810..5189304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFGDV_RS24105 - 5179507..5180061 (-) 555 WP_136417818.1 DUF2726 domain-containing protein -
  ACFGDV_RS24110 - 5180330..5181829 (-) 1500 WP_247869637.1 HDOD domain-containing protein -
  ACFGDV_RS24115 - 5181859..5183580 (-) 1722 WP_136417820.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  ACFGDV_RS24120 ssb 5183810..5184304 (-) 495 WP_136417821.1 single-stranded DNA-binding protein Machinery gene
  ACFGDV_RS24125 - 5184359..5185555 (-) 1197 WP_136418051.1 MFS transporter -
  ACFGDV_RS24130 uvrA 5185747..5188599 (+) 2853 WP_136417822.1 excinuclease ABC subunit UvrA -
  ACFGDV_RS24135 - 5188615..5188893 (+) 279 WP_136417823.1 acylphosphatase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17947.00 Da        Isoelectric Point: 5.9468

>NTDB_id=1080731 ACFGDV_RS24120 WP_136417821.1 5183810..5184304(-) (ssb) [Noviherbaspirillum sp. ST 5-3]
MASVNKVIIVGNLGRDPETRYMPNGDAVTNIAVATTESWKDKNTGEKKELTEWHRITFYRKLAEIAGQYLKKGSQIYVEG
RLQTRKWTDKDGVERYTTEIIADTMQMLGSRQGMGGGAPMDDDYGSSAPAPRQSAGGGNAGASRGAPQQRPAPNFSDMDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1080731 ACFGDV_RS24120 WP_136417821.1 5183810..5184304(-) (ssb) [Noviherbaspirillum sp. ST 5-3]
ATGGCATCCGTCAACAAAGTCATTATCGTCGGCAACCTCGGGCGCGATCCTGAAACGCGCTACATGCCGAACGGCGATGC
AGTCACGAATATCGCGGTTGCGACCACCGAAAGCTGGAAAGACAAGAATACCGGCGAAAAGAAGGAATTGACCGAATGGC
ACCGCATTACCTTCTACCGCAAACTGGCGGAAATCGCCGGCCAGTACCTGAAAAAGGGCTCGCAGATCTACGTGGAAGGC
CGCCTGCAGACGCGCAAGTGGACGGACAAGGACGGTGTCGAACGCTACACCACTGAAATCATCGCCGACACCATGCAGAT
GCTCGGCAGCCGTCAGGGCATGGGCGGTGGCGCCCCGATGGACGATGATTACGGCAGCAGCGCTCCGGCACCTCGGCAGA
GCGCCGGCGGAGGCAATGCCGGCGCTTCGCGCGGTGCTCCGCAGCAGCGCCCGGCGCCGAACTTCAGCGATATGGACGAC
GATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

54.945

100

0.61
  ssb Vibrio cholerae strain A1552

53.333

100

0.585
  ssb Neisseria gonorrhoeae MS11

53.107

100

0.573
  ssb Neisseria meningitidis MC58

52.874

100

0.561

Multiple sequence alignment