Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACKW6F_RS16610 Genome accession   NZ_CP176527
Coordinates   3239638..3240327 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus safensis strain D-62     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3234638..3245327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKW6F_RS16575 (ACKW6F_16575) - 3234718..3235200 (-) 483 WP_149126229.1 flagellar protein FlgN -
  ACKW6F_RS16580 (ACKW6F_16580) flgM 3235219..3235482 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACKW6F_RS16585 (ACKW6F_16585) - 3235562..3235981 (-) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  ACKW6F_RS16590 (ACKW6F_16590) comFC 3236038..3236694 (-) 657 WP_244948474.1 ComF family protein Machinery gene
  ACKW6F_RS16595 (ACKW6F_16595) - 3236721..3237014 (-) 294 WP_025093967.1 late competence development ComFB family protein -
  ACKW6F_RS16600 (ACKW6F_16600) comFA 3237063..3238460 (-) 1398 WP_276507389.1 DEAD/DEAH box helicase Machinery gene
  ACKW6F_RS16605 (ACKW6F_16605) - 3238581..3239423 (-) 843 WP_024423625.1 DegV family protein -
  ACKW6F_RS16610 (ACKW6F_16610) degU 3239638..3240327 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ACKW6F_RS16615 (ACKW6F_16615) degS 3240392..3241567 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  ACKW6F_RS16620 (ACKW6F_16620) - 3241788..3242456 (+) 669 WP_012011434.1 YigZ family protein -
  ACKW6F_RS16625 (ACKW6F_16625) - 3242441..3243532 (+) 1092 WP_024423626.1 LCP family protein -
  ACKW6F_RS16630 (ACKW6F_16630) - 3243568..3244635 (-) 1068 WP_024423627.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=1080702 ACKW6F_RS16610 WP_008348273.1 3239638..3240327(-) (degU) [Bacillus safensis strain D-62]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1080702 ACKW6F_RS16610 WP_008348273.1 3239638..3240327(-) (degU) [Bacillus safensis strain D-62]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGCTAAAAGA
AATGGATGCAGACACACTTATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ATTTAGTAAATGAATTCCGACGCTTGGCAACCAGCGGCGTTTCAGCACATCCACAGCATGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTTAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment