Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ACK1O1_RS16005 Genome accession   NZ_CP176505
Coordinates   3512217..3513275 (-) Length   352 a.a.
NCBI ID   WP_057496791.1    Uniprot ID   A0A0R0BD82
Organism   Stenotrophomonas maltophilia strain PSKL1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3507217..3518275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1O1_RS15985 (ACK1O1_15985) - 3508167..3510137 (-) 1971 WP_057496787.1 type IV pilus secretin PilQ -
  ACK1O1_RS15990 (ACK1O1_15990) - 3510159..3510692 (-) 534 WP_107231669.1 pilus assembly protein PilP -
  ACK1O1_RS15995 (ACK1O1_15995) - 3510692..3511348 (-) 657 WP_107231668.1 type 4a pilus biogenesis protein PilO -
  ACK1O1_RS16000 (ACK1O1_16000) - 3511345..3512217 (-) 873 WP_249842991.1 PilN domain-containing protein -
  ACK1O1_RS16005 (ACK1O1_16005) pilM 3512217..3513275 (-) 1059 WP_057496791.1 pilus assembly protein PilM Machinery gene
  ACK1O1_RS16010 (ACK1O1_16010) - 3513496..3515919 (+) 2424 WP_306803761.1 penicillin-binding protein 1A -
  ACK1O1_RS16015 (ACK1O1_16015) - 3516148..3516792 (+) 645 WP_107231665.1 hypothetical protein -
  ACK1O1_RS16020 (ACK1O1_16020) - 3516829..3517572 (-) 744 WP_249842990.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37725.35 Da        Isoelectric Point: 4.4006

>NTDB_id=1080507 ACK1O1_RS16005 WP_057496791.1 3512217..3513275(-) (pilM) [Stenotrophomonas maltophilia strain PSKL1]
MGLIPKSQSPLVGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAA
VAGSAVITKVIPMPADLDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAYALVASELPVSIDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLA
QMTLGPKVNAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1080507 ACK1O1_RS16005 WP_057496791.1 3512217..3513275(-) (pilM) [Stenotrophomonas maltophilia strain PSKL1]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTCGTTGGCGTCGACATCAGTTCGACTGCGGTAAAGCTTTTGCAGCTGTC
CCGCAGCGGCAATCGTTTCCGTGTGGAACATTATGCTGTGGAACCTCTTCCGCCGAATGCGGTGGTGGAGAAGAACATCG
TGGAAGTGGAGGCCGTGGGTGAGGCCATCCGCCGCGCGATGAACCGTTCAGGCAGCAAGGCCAAGCTGGCCGCCGCTGCC
GTGGCCGGCTCGGCGGTGATCACCAAGGTGATCCCGATGCCCGCCGACCTGGACGAAAACGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTATCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ATCCGGAAATGGTCCAGGTGCTGCTGGCCGCATCGCGTTCGGAGAACGTGGAGCTGCGCCAGTCGGCACTGGAGCTGGGC
GGCCTGCAGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTACGCCCTGGTCGCCAGTGAACTGCCGGT
GTCCATCGACGGCGTGGTTGCGCTGGTCGATATCGGCGCCACCATGACCACGCTCAACGTCCTGCGCGGCGGCCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGATCATGCGCCGCTATGGCCTGAGCTACGAGGAA
GCCGGCCTGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAGGCCACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCCGGCAGCGAATTCAACCGCGTCGATCACATCGTGCTGGCCGGCG
GTTGCGCCGTGCTCGGGGGCCTGCCGGAGATGGTCGAAGAACAGCTGGGCGTGCCGACCGTGGTCGCCAACCCGCTGGCA
CAGATGACCCTGGGGCCGAAGGTGAACGCGCATGCGCTGGCCCAGGATGCCCCCGCGCTGATGATCGCCACCGGTCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R0BD82

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.42

100

0.514
  comM Acinetobacter nosocomialis M2

51.42

100

0.514
  comM Acinetobacter baylyi ADP1

50.284

100

0.503
  pilM Legionella pneumophila strain ERS1305867

47.863

99.716

0.477

Multiple sequence alignment