Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ACJ7VY_RS12750 Genome accession   NZ_CP176501
Coordinates   2811516..2812574 (-) Length   352 a.a.
NCBI ID   WP_104940255.1    Uniprot ID   -
Organism   Stenotrophomonas sp. Y-13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2806516..2817574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ7VY_RS12725 (ACJ7VY_12725) - 2806564..2807574 (-) 1011 WP_293761551.1 MoxR family ATPase -
  ACJ7VY_RS12730 (ACJ7VY_12730) - 2807691..2809571 (-) 1881 WP_313247607.1 type IV pilus secretin PilQ family protein -
  ACJ7VY_RS12735 (ACJ7VY_12735) - 2809593..2810129 (-) 537 WP_161614968.1 pilus assembly protein PilP -
  ACJ7VY_RS12740 (ACJ7VY_12740) - 2810129..2810806 (-) 678 WP_104939461.1 type 4a pilus biogenesis protein PilO -
  ACJ7VY_RS12745 (ACJ7VY_12745) - 2810803..2811516 (-) 714 WP_409475756.1 PilN domain-containing protein -
  ACJ7VY_RS12750 (ACJ7VY_12750) pilM 2811516..2812574 (-) 1059 WP_104940255.1 pilus assembly protein PilM Machinery gene
  ACJ7VY_RS12755 (ACJ7VY_12755) - 2812793..2815216 (+) 2424 WP_409475757.1 penicillin-binding protein 1A -
  ACJ7VY_RS12760 (ACJ7VY_12760) - 2815295..2815933 (+) 639 WP_409475758.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37413.99 Da        Isoelectric Point: 4.4316

>NTDB_id=1080483 ACJ7VY_RS12750 WP_104940255.1 2811516..2812574(-) (pilM) [Stenotrophomonas sp. Y-13]
MGLIPKSQPPIIGVDISSTAVKLLQLARSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVARSGTRAKGAAAA
VAGSAVITKVIPMPADLDEADMEAQVELEAVNYIPYPIEEVSLDFEVLGPVPNNPEMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAIENAFALVASELPVASDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEVMRRYGLSYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQIGRLLQFFYAGSEFNRVDHIVLAGGCASLPGLPVMVEEQLGVSTSVANPLA
QMTLGQKVQAHALAQDAPALMIATGLALRGFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1080483 ACJ7VY_RS12750 WP_104940255.1 2811516..2812574(-) (pilM) [Stenotrophomonas sp. Y-13]
GTGGGGCTTATCCCAAAGAGTCAACCACCGATCATCGGTGTTGACATCAGCTCGACTGCGGTGAAGCTGCTTCAGCTTGC
CCGCAGCGGCAATCGTTTTCGCGTGGAACACTACGCCGTGGAACCGCTTCCGCCCAATGCGGTGGTGGAAAAGAACATCG
TCGAGGTCGAGGCGGTCGGCGAAGCCATACGCCGTGCGGTGGCCCGCTCGGGAACCCGCGCCAAGGGCGCGGCCGCCGCG
GTCGCCGGCTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCGGACCTGGACGAGGCCGACATGGAAGCCCAAGTCGA
GCTGGAGGCGGTGAACTACATCCCGTACCCGATCGAGGAAGTGAGCCTGGACTTCGAGGTGCTCGGGCCGGTGCCCAACA
ACCCGGAAATGGTCCAGGTGCTGCTGGCGGCCTCGCGTTCGGAGAACGTCGAACTGCGCCAGTCGGCGCTGGAGCTCGGC
GGGCTGGTGGCCAAGGTCATGGACGTGGAAGCGTTCGCCATCGAGAACGCCTTCGCGCTGGTGGCCAGCGAGCTGCCGGT
GGCCAGCGACGGCGTCGTGGCGCTGGTGGACATCGGCGCCACCATGACCACGCTCAACGTCCTGCGCGGTGGTCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTCACCGACGAGGTGATGCGCCGCTACGGCCTGAGCTACGAGGAA
GCCGGGCTGGCCAAGCGCCAGGGCGGGTTGCCCGAGAGCTACGAGGTGGAAGTGCTGGAGCCGTTCAAGGAGGCCACGGT
CCAGCAGATCGGCCGCCTGCTGCAGTTCTTCTATGCCGGCAGCGAGTTCAATCGCGTCGACCACATCGTGCTGGCCGGCG
GCTGCGCGTCGCTGCCGGGGCTGCCGGTGATGGTCGAGGAACAGCTGGGAGTGAGTACGTCGGTGGCCAATCCGCTGGCG
CAGATGACGCTGGGGCAGAAGGTGCAGGCGCATGCGCTGGCCCAGGACGCCCCGGCGCTGATGATCGCTACCGGCCTGGC
CCTGCGGGGGTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50

100

0.5
  comM Acinetobacter nosocomialis M2

50

100

0.5
  comM Acinetobacter baylyi ADP1

50.292

97.159

0.489
  pilM Legionella pneumophila strain ERS1305867

46.857

99.432

0.466

Multiple sequence alignment