Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   ACKWPP_RS08950 Genome accession   NZ_CP176418
Coordinates   1772310..1772954 (+) Length   214 a.a.
NCBI ID   WP_409373838.1    Uniprot ID   -
Organism   Streptococcus suis strain KKAHC02     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1767310..1777954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWPP_RS08930 (ACKWPP_08930) - 1768047..1769384 (-) 1338 WP_002942867.1 hemolysin family protein -
  ACKWPP_RS08935 (ACKWPP_08935) - 1769552..1770682 (-) 1131 WP_024400816.1 ISAs1 family transposase -
  ACKWPP_RS08940 (ACKWPP_08940) - 1770839..1771618 (+) 780 WP_409373836.1 ABC transporter ATP-binding protein -
  ACKWPP_RS08945 (ACKWPP_08945) - 1771634..1772188 (-) 555 WP_409373837.1 tRNA (mnm(5)s(2)U34)-methyltransferase -
  ACKWPP_RS08950 (ACKWPP_08950) cclA/cilC 1772310..1772954 (+) 645 WP_409373838.1 prepilin peptidase Machinery gene
  ACKWPP_RS08955 (ACKWPP_08955) - 1773062..1774522 (+) 1461 WP_409373839.1 nicotinate phosphoribosyltransferase -
  ACKWPP_RS08960 (ACKWPP_08960) nadE 1774535..1775359 (+) 825 WP_409373840.1 ammonia-dependent NAD(+) synthetase -
  ACKWPP_RS08965 (ACKWPP_08965) - 1775714..1775899 (+) 186 WP_061843620.1 hypothetical protein -
  ACKWPP_RS08970 (ACKWPP_08970) tnpB 1775880..1776116 (+) 237 WP_409373841.1 IS66 family insertion sequence element accessory protein TnpB -
  ACKWPP_RS08975 (ACKWPP_08975) - 1776284..1776469 (+) 186 WP_409373842.1 transposase -
  ACKWPP_RS08980 (ACKWPP_08980) - 1776423..1777871 (+) 1449 Protein_1730 transposase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24257.41 Da        Isoelectric Point: 8.4760

>NTDB_id=1080076 ACKWPP_RS08950 WP_409373838.1 1772310..1772954(+) (cclA/cilC) [Streptococcus suis strain KKAHC02]
MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPSSHCNACKRRLKAWDLIPVLSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LVVLLCHFQILNLTETILILAGLVLTIYDIKHQEYPFAIWLVFTFIALVLSQLNWLFCGFLLLAYLTEKWQINIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFTIFKPKSIPYVPLLFLSSIPIILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1080076 ACKWPP_RS08950 WP_409373838.1 1772310..1772954(+) (cclA/cilC) [Streptococcus suis strain KKAHC02]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCGCCCCCTCTAGTCACTGCAATGCCTGCAAGCGACGGCTCAAGGCCTGGGACTTAATTCCAGTCCTATCCC
AGCTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGACTAGAATTCTTAGCTGGT
CTAGTTGTCCTGCTCTGCCATTTTCAAATCCTAAACCTGACCGAAACCATTCTCATCTTGGCAGGACTAGTTTTGACCAT
TTACGACATCAAACATCAGGAATATCCTTTTGCTATCTGGCTTGTTTTTACTTTTATAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTCTTCTGTGGCTTTTTGCTCCTGGCCTATCTGACTGAAAAATGGCAAATCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCACTATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTTTTTCTTTCAAGTATTCCTATCATTCTGTGCA
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

49.057

99.065

0.486
  cclA/cilC Streptococcus pneumoniae Rx1

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae D39

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae R6

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae TIGR4

47.573

96.262

0.458
  cclA/cilC Streptococcus mitis NCTC 12261

45.283

99.065

0.449

Multiple sequence alignment