Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ACKWPP_RS02815 Genome accession   NZ_CP176418
Coordinates   507685..508350 (+) Length   221 a.a.
NCBI ID   WP_044668887.1    Uniprot ID   A0A0Z8IMZ9
Organism   Streptococcus suis strain KKAHC02     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 502685..513350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWPP_RS02790 (ACKWPP_02790) - 502896..504296 (+) 1401 WP_044668895.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  ACKWPP_RS02795 (ACKWPP_02795) - 504298..504669 (+) 372 WP_002937017.1 S1 RNA-binding domain-containing protein -
  ACKWPP_RS02800 (ACKWPP_02800) cysK 504695..505621 (-) 927 WP_044668892.1 cysteine synthase A -
  ACKWPP_RS02805 (ACKWPP_02805) - 505711..506343 (-) 633 WP_015646510.1 YigZ family protein -
  ACKWPP_RS02810 (ACKWPP_02810) comFA/cflA 506400..507692 (+) 1293 WP_044668890.1 DEAD/DEAH box helicase Machinery gene
  ACKWPP_RS02815 (ACKWPP_02815) comFC/cflB 507685..508350 (+) 666 WP_044668887.1 ComF family protein Machinery gene
  ACKWPP_RS02820 (ACKWPP_02820) hpf 508427..508969 (+) 543 WP_004194117.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25716.55 Da        Isoelectric Point: 8.4541

>NTDB_id=1080057 ACKWPP_RS02815 WP_044668887.1 507685..508350(+) (comFC/cflB) [Streptococcus suis strain KKAHC02]
MSNCLLCGQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLNATNIPYQSLLGKYESPKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1080057 ACKWPP_RS02815 WP_044668887.1 507685..508350(+) (comFC/cflB) [Streptococcus suis strain KKAHC02]
ATGTCTAATTGCCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTTATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAACGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAAAGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAATGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCCAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8IMZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae D39

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae R6

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484

Multiple sequence alignment