Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACKWCM_RS16730 Genome accession   NZ_CP176416
Coordinates   3262587..3263276 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus safensis strain GUCCb3-7     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3257587..3268276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWCM_RS16695 (ACKWCM_16695) - 3257666..3258148 (-) 483 WP_149126229.1 flagellar protein FlgN -
  ACKWCM_RS16700 (ACKWCM_16700) flgM 3258167..3258430 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACKWCM_RS16705 (ACKWCM_16705) - 3258510..3258929 (-) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  ACKWCM_RS16710 (ACKWCM_16710) comFC 3258986..3259642 (-) 657 WP_244948474.1 ComF family protein Machinery gene
  ACKWCM_RS16715 (ACKWCM_16715) - 3259669..3259962 (-) 294 WP_025093967.1 late competence development ComFB family protein -
  ACKWCM_RS16720 (ACKWCM_16720) comFA 3260011..3261411 (-) 1401 WP_409362645.1 DEAD/DEAH box helicase Machinery gene
  ACKWCM_RS16725 (ACKWCM_16725) - 3261529..3262371 (-) 843 WP_024423625.1 DegV family protein -
  ACKWCM_RS16730 (ACKWCM_16730) degU 3262587..3263276 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ACKWCM_RS16735 (ACKWCM_16735) degS 3263341..3264516 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  ACKWCM_RS16740 (ACKWCM_16740) - 3264738..3265406 (+) 669 WP_012011434.1 YigZ family protein -
  ACKWCM_RS16745 (ACKWCM_16745) - 3265391..3266482 (+) 1092 WP_024423626.1 LCP family protein -
  ACKWCM_RS16750 (ACKWCM_16750) - 3266518..3267585 (-) 1068 WP_024423627.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=1079994 ACKWCM_RS16730 WP_008348273.1 3262587..3263276(-) (degU) [Bacillus safensis strain GUCCb3-7]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1079994 ACKWCM_RS16730 WP_008348273.1 3262587..3263276(-) (degU) [Bacillus safensis strain GUCCb3-7]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGCTAAAAGA
AATGGATGCAGACACACTTATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ATTTAGTAAATGAATTCCGACGCTTGGCAACCAGCGGCGTTTCAGCACATCCACAGCATGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTTAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment